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TBX1 T-box 1 [ Gallus gallus (chicken) ]

Gene ID: 771328, updated on 17-Aug-2024

Summary

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Symbol
TBX1provided by CGNC
Full Name
T-box 1provided by CGNC
Primary source
CGNC:56694
See related
Ensembl:ENSGALG00010024528
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See TBX1 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
18
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 15 NC_052546.1 (806831..973520)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 15 NC_052587.1 (812279..979025)

Chromosome 15 - NC_052546.1Genomic Context describing neighboring genes Neighboring gene septin 5 Neighboring gene microRNA 1729 Neighboring gene glycoprotein Ib platelet beta subunit Neighboring gene uncharacterized LOC121106879 Neighboring gene G protein subunit beta 1 like Neighboring gene thioredoxin reductase 2 Neighboring gene catechol-O-methyltransferase Neighboring gene armadillo repeat gene deleted in velocardiofacial syndrome Neighboring gene transport and golgi organization 2 homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell fate specification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
T-box transcription factor TBX1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052546.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    806831..973520
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046901204.1 → XP_046757160.1  T-box transcription factor TBX1 isoform X2

  2. XM_025155714.3 → XP_025011482.1  T-box transcription factor TBX1 isoform X2

    Conserved Domains (1) summary
    cd20187
    Location:174 → 362
    T-box_TBX1_10-like; DNA-binding domain of T-box transcription factor 1 and 10, and related T-box proteifactors

  3. XM_040648295.2 → XP_040504229.1  T-box transcription factor TBX1 isoform X4

    Conserved Domains (1) summary
    smart00425
    Location:138 → 330
    TBOX; Domain first found in the mice T locus (Brachyury) protein

  4. XM_046901205.1 → XP_046757161.1  T-box transcription factor TBX1 isoform X4

  5. XM_025155717.3 → XP_025011485.1  T-box transcription factor TBX1 isoform X5

    Conserved Domains (1) summary
    cd20187
    Location:190 → 378
    T-box_TBX1_10-like; DNA-binding domain of T-box transcription factor 1 and 10, and related T-box proteifactors

  6. XM_025155713.3 → XP_025011481.1  T-box transcription factor TBX1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZY34
    Related
    ENSGALP00010036596.1, ENSGALT00010059836.1
    Conserved Domains (1) summary
    cd20187
    Location:190 → 378
    T-box_TBX1_10-like; DNA-binding domain of T-box transcription factor 1 and 10, and related T-box proteifactors

  7. XM_025155716.3 → XP_025011484.1  T-box transcription factor TBX1 isoform X3

    Conserved Domains (1) summary
    cd20187
    Location:173 → 361
    T-box_TBX1_10-like; DNA-binding domain of T-box transcription factor 1 and 10, and related T-box proteifactors

RNA

  1. XR_005840114.2 RNA Sequence

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052587.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    812279..979025
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046928310.1 → XP_046784266.1  T-box transcription factor TBX1 isoform X2

  2. XM_040684267.2 → XP_040540201.1  T-box transcription factor TBX1 isoform X2

    Conserved Domains (1) summary
    cd20187
    Location:174 → 362
    T-box_TBX1_10-like; DNA-binding domain of T-box transcription factor 1 and 10, and related T-box proteifactors

  3. XM_040684269.2 → XP_040540203.1  T-box transcription factor TBX1 isoform X4

    Conserved Domains (1) summary
    smart00425
    Location:138 → 330
    TBOX; Domain first found in the mice T locus (Brachyury) protein

  4. XM_046928312.1 → XP_046784268.1  T-box transcription factor TBX1 isoform X4

  5. XM_040684270.2 → XP_040540204.1  T-box transcription factor TBX1 isoform X5

    Conserved Domains (1) summary
    cd20187
    Location:190 → 378
    T-box_TBX1_10-like; DNA-binding domain of T-box transcription factor 1 and 10, and related T-box proteifactors

  6. XM_040684266.2 → XP_040540200.1  T-box transcription factor TBX1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZY34
    Conserved Domains (1) summary
    cd20187
    Location:190 → 378
    T-box_TBX1_10-like; DNA-binding domain of T-box transcription factor 1 and 10, and related T-box proteifactors

  7. XM_040684268.2 → XP_040540202.1  T-box transcription factor TBX1 isoform X3

    Conserved Domains (1) summary
    cd20187
    Location:173 → 361
    T-box_TBX1_10-like; DNA-binding domain of T-box transcription factor 1 and 10, and related T-box proteifactors

RNA

  1. XR_005854346.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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