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COL9A1 collagen type IX alpha 1 chain [ Gallus gallus (chicken) ]

Gene ID: 771873, updated on 17-Aug-2024

Summary

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Official Symbol
COL9A1provided by CGNC
Official Full Name
collagen type IX alpha 1 chainprovided by CGNC
Primary source
CGNC:11923
See related
Ensembl:ENSGALG00010001727
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See COL9A1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
39
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 3 NC_052534.1 (82510679..82576754)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 3 NC_052575.1 (82301350..82367562)

Chromosome 3 - NC_052534.1Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 135 member A Neighboring gene succinate dehydrogenase complex assembly factor 4 Neighboring gene uncharacterized LOC121110180 Neighboring gene collagen type XIX alpha 1 chain Neighboring gene LMBR1 domain containing 1 Neighboring gene adhesion G protein-coupled receptor B3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Synthesis and characterization of cDNA encoding a cartilage-specific short collagen. Ninomiya Y, et al. Proc Natl Acad Sci U S A, 1984 May. PMID 6328487, Free PMC Article
  2. Cartilage type IX collagen-proteoglycan contains a large amino-terminal globular domain encoded by multiple exons. Vasios G, et al. J Biol Chem, 1988 Feb 15. PMID 3339014
  3. The structure of type IX collagen. van der Rest M, et al. J Biol Chem, 1985 Jan 10. PMID 2981204
  4. The structure of type IX collagen. Mayne R, et al. Ann N Y Acad Sci, 1985. PMID 3868958
  5. A distinct class of vertebrate collagen genes encodes chicken type IX collagen polypeptides. Lozano G, et al. Proc Natl Acad Sci U S A, 1985 Jun. PMID 3858862, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
collagen alpha-1(IX) chain
Names
alpha 1(IX)
alpha(IX) collagen-proteoglycan
cartilage alpha(IX) collagen
collagen, type IX, alpha 1
type IX collagen

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001100911.2 → NP_001094381.1  collagen alpha-1(IX) chain precursor

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000065
    UniProtKB/TrEMBL
    F1NQ20
    Related
    ENSGALP00010002288.1, ENSGALT00010003989.1
    Conserved Domains (2) summary
    pfam01391
    Location:482 → 539
    Collagen; Collagen triple helix repeat (20 copies)
    smart00210
    Location:50 → 244
    TSPN; Thrombospondin N-terminal -like domains

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052534.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    82510679..82576754
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040697332.2 → XP_040553266.1  collagen alpha-1(IX) chain isoform X1

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052575.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    82301350..82367562
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046914415.1 → XP_046770371.1  collagen alpha-1(IX) chain isoform X1

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P12106.4 GenPept UniProtKB/Swiss-Prot:P12106

Gene LinkOut

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Molecular Biology Databases
Research Materials