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NR6A1 nuclear receptor subfamily 6 group A member 1 [ Gallus gallus (chicken) ]

Gene ID: 772325, updated on 17-Aug-2024

Summary

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Official Symbol
NR6A1provided by CGNC
Official Full Name
nuclear receptor subfamily 6 group A member 1provided by CGNC
Primary source
CGNC:727
See related
Ensembl:ENSGALG00010028917
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See NR6A1 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
11
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 17 NC_052548.1 (10056523..10121763, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 17 NC_052589.1 (9466964..9532242, complement)

Chromosome 17 - NC_052548.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112529977 Neighboring gene adhesion G protein-coupled receptor D2 Neighboring gene nuclear receptor subfamily 5 group A member 1 Neighboring gene uncharacterized LOC107052170 Neighboring gene microRNA 181a-2 Neighboring gene microRNA 181b-2 Neighboring gene olfactomedin like 2A Neighboring gene microRNA 6712 Neighboring gene ribosomal protein L35 Neighboring gene suppressor of cancer cell invasion

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Molecular cloning and characterization of the germ cell-related nuclear orphan receptor in chickens. Lee SI, et al. Mol Reprod Dev, 2010 Mar. PMID 20020523
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear receptor subfamily 6 group A member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052548.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    10056523..10121763 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015279584.4 → XP_015135070.1  nuclear receptor subfamily 6 group A member 1 isoform X3

    UniProtKB/TrEMBL
    A0A8V1AAT0, A0A8V1AG53
    Related
    ENSGALP00010043091.1, ENSGALT00010069965.1
    Conserved Domains (2) summary
    cd06953
    Location:229 → 441
    NR_LBD_DHR4_like; The ligand binding domain of orphan nuclear receptor Ecdysone-induced receptor DHR4
    cd07169
    Location:24 → 113
    NR_DBD_GCNF_like; DNA-binding domain of Germ cell nuclear factor (GCNF) F1 is composed of two C4-type zinc fingers

  2. XM_015279583.4 → XP_015135069.1  nuclear receptor subfamily 6 group A member 1 isoform X2

    UniProtKB/TrEMBL
    A0A8V1AAT5
    Related
    ENSGALP00010043090.1, ENSGALT00010069964.1
    Conserved Domains (2) summary
    cd06953
    Location:247 → 459
    NR_LBD_DHR4_like; The ligand binding domain of orphan nuclear receptor Ecdysone-induced receptor DHR4
    cd07169
    Location:43 → 132
    NR_DBD_GCNF_like; DNA-binding domain of Germ cell nuclear factor (GCNF) F1 is composed of two C4-type zinc fingers

  3. XM_015279582.4 → XP_015135068.1  nuclear receptor subfamily 6 group A member 1 isoform X1

    UniProtKB/TrEMBL
    A0A8V1AAT5
    Related
    ENSGALP00010043088.1, ENSGALT00010069962.1
    Conserved Domains (2) summary
    cd06953
    Location:248 → 460
    NR_LBD_DHR4_like; The ligand binding domain of orphan nuclear receptor Ecdysone-induced receptor DHR4
    cd07169
    Location:43 → 132
    NR_DBD_GCNF_like; DNA-binding domain of Germ cell nuclear factor (GCNF) F1 is composed of two C4-type zinc fingers

  4. XM_040649148.2 → XP_040505082.1  nuclear receptor subfamily 6 group A member 1 isoform X5

    UniProtKB/TrEMBL
    A0A8V1AKD8
    Related
    ENSGALP00010043084.1, ENSGALT00010069958.1
    Conserved Domains (2) summary
    cd06953
    Location:214 → 426
    NR_LBD_DHR4_like; The ligand binding domain of orphan nuclear receptor Ecdysone-induced receptor DHR4
    cd07169
    Location:10 → 99
    NR_DBD_GCNF_like; DNA-binding domain of Germ cell nuclear factor (GCNF) F1 is composed of two C4-type zinc fingers

  5. XM_001235477.7 → XP_001235478.3  nuclear receptor subfamily 6 group A member 1 isoform X4

    UniProtKB/TrEMBL
    A0A8V1AKD8
    Related
    ENSGALP00010043086.1, ENSGALT00010069960.1
    Conserved Domains (2) summary
    cd06953
    Location:215 → 427
    NR_LBD_DHR4_like; The ligand binding domain of orphan nuclear receptor Ecdysone-induced receptor DHR4
    cd07169
    Location:10 → 99
    NR_DBD_GCNF_like; DNA-binding domain of Germ cell nuclear factor (GCNF) F1 is composed of two C4-type zinc fingers

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052589.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    9466964..9532242 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040685556.2 → XP_040541490.1  nuclear receptor subfamily 6 group A member 1 isoform X3

    UniProtKB/TrEMBL
    A0A8V1AAT0, A0A8V1AG53
    Conserved Domains (2) summary
    cd06953
    Location:229 → 441
    NR_LBD_DHR4_like; The ligand binding domain of orphan nuclear receptor Ecdysone-induced receptor DHR4
    cd07169
    Location:24 → 113
    NR_DBD_GCNF_like; DNA-binding domain of Germ cell nuclear factor (GCNF) F1 is composed of two C4-type zinc fingers

  2. XM_040685555.2 → XP_040541489.1  nuclear receptor subfamily 6 group A member 1 isoform X2

    UniProtKB/TrEMBL
    A0A8V1AAT5
    Conserved Domains (2) summary
    cd06953
    Location:247 → 459
    NR_LBD_DHR4_like; The ligand binding domain of orphan nuclear receptor Ecdysone-induced receptor DHR4
    cd07169
    Location:43 → 132
    NR_DBD_GCNF_like; DNA-binding domain of Germ cell nuclear factor (GCNF) F1 is composed of two C4-type zinc fingers

  3. XM_040685554.2 → XP_040541488.1  nuclear receptor subfamily 6 group A member 1 isoform X1

    UniProtKB/TrEMBL
    A0A8V1AAT5
    Conserved Domains (2) summary
    cd06953
    Location:248 → 460
    NR_LBD_DHR4_like; The ligand binding domain of orphan nuclear receptor Ecdysone-induced receptor DHR4
    cd07169
    Location:43 → 132
    NR_DBD_GCNF_like; DNA-binding domain of Germ cell nuclear factor (GCNF) F1 is composed of two C4-type zinc fingers

  4. XM_040685558.2 → XP_040541492.1  nuclear receptor subfamily 6 group A member 1 isoform X5

    UniProtKB/TrEMBL
    A0A8V1AKD8
    Conserved Domains (2) summary
    cd06953
    Location:214 → 426
    NR_LBD_DHR4_like; The ligand binding domain of orphan nuclear receptor Ecdysone-induced receptor DHR4
    cd07169
    Location:10 → 99
    NR_DBD_GCNF_like; DNA-binding domain of Germ cell nuclear factor (GCNF) F1 is composed of two C4-type zinc fingers

  5. XM_040685557.2 → XP_040541491.1  nuclear receptor subfamily 6 group A member 1 isoform X4

    UniProtKB/TrEMBL
    A0A8V1AKD8
    Conserved Domains (2) summary
    cd06953
    Location:215 → 427
    NR_LBD_DHR4_like; The ligand binding domain of orphan nuclear receptor Ecdysone-induced receptor DHR4
    cd07169
    Location:10 → 99
    NR_DBD_GCNF_like; DNA-binding domain of Germ cell nuclear factor (GCNF) F1 is composed of two C4-type zinc fingers
Nucleotide Protein Strain
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