U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

C330018D20Rik RIKEN cDNA C330018D20 gene [ Mus musculus (house mouse) ]

Gene ID: 77422, updated on 27-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
C330018D20Rikprovided by MGI
Official Full Name
RIKEN cDNA C330018D20 geneprovided by MGI
Primary source
MGI:MGI:1924672
See related
Ensembl:ENSMUSG00000024592 AllianceGenome:MGI:1924672
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Located in mitochondrion. Orthologous to human C5orf63 (chromosome 5 open reading frame 63). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Ubiquitous expression in bladder adult (RPKM 3.6), liver E14 (RPKM 3.4) and 24 other tissues See more
Orthologs
human all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See C330018D20Rik in Genome Data Viewer
Location:
18 D3; 18 31.22 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (57088900..57108460, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (56955828..56975379, complement)

Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene membrane associated ring-CH-type finger 3 Neighboring gene STARR-positive B cell enhancer ABC_E1959 Neighboring gene ribosomal protein S3 pseudogene Neighboring gene STARR-seq mESC enhancer starr_44682 Neighboring gene predicted gene, 34632 Neighboring gene predicted gene 10536 Neighboring gene mitochondrial ribosomal protein L35 pseudogene Neighboring gene polymerase (RNA) II (DNA directed) polypeptide K pseudogene

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Global discovery of erythroid long noncoding RNAs reveals novel regulators of red cell maturation. Alvarez-Dominguez JR, et al. Blood, 2014 Jan 23. PMID 24200680, Free PMC Article
  2. Widespread and dynamic translational control of red blood cell development. Alvarez-Dominguez JR, et al. Blood, 2017 Feb 2. PMID 27899360, Free PMC Article
  3. Construction of long-transcript enriched cDNA libraries from submicrogram amounts of total RNAs by a universal PCR amplification method. Piao Y, et al. Genome Res, 2001 Sep. PMID 11544199, Free PMC Article
  4. A mitochondrial protein compendium elucidates complex I disease biology. Pagliarini DJ, et al. Cell, 2008 Jul 11. PMID 18614015, Free PMC Article
  5. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249

See all (16) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in mitochondrion HDA PubMed 

General protein information

Go to the top of the page Help
Preferred Names
glutaredoxin-like protein C5orf63 homolog
Names
glutaredoxin-like protein YDR286C homolog

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_029909.1 → NP_084185.1  glutaredoxin-like protein C5orf63 homolog

    See identical proteins and their annotated locations for NP_084185.1

    Status: VALIDATED

    Source sequence(s)
    AC109152, AK140255, CD561591
    Consensus CDS
    CCDS50293.1
    UniProtKB/Swiss-Prot
    Q9CWB7
    Related
    ENSMUSP00000025488.9, ENSMUST00000025488.15
    Conserved Domains (1) summary
    pfam05768
    Location:32 → 104
    DUF836; Glutaredoxin-like domain (DUF836)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000084.7 Reference GRCm39 C57BL/6J

    Range
    57088900..57108460 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006526351.5 → XP_006526414.1  glutaredoxin-like protein C5orf63 homolog isoform X1

    See identical proteins and their annotated locations for XP_006526414.1

    UniProtKB/Swiss-Prot
    Q9CWB7
    Related
    ENSMUSP00000116181.3, ENSMUST00000139243.9
    Conserved Domains (1) summary
    pfam05768
    Location:32 → 104
    DUF836; Glutaredoxin-like domain (DUF836)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9CWB7.1 GenPept UniProtKB/Swiss-Prot:Q9CWB7

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools