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Pate13 prostate and testis expressed 13 [ Mus musculus (house mouse) ]

Gene ID: 77908, updated on 9-Dec-2024

Summary

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Official Symbol
Pate13provided by MGI
Official Full Name
prostate and testis expressed 13provided by MGI
Primary source
MGI:MGI:1925158
See related
Ensembl:ENSMUSG00000078934 AllianceGenome:MGI:1925158
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
9230113P08Rik
Summary
Predicted to be located in extracellular region. [provided by Alliance of Genome Resources, Dec 2024]
Expression
Restricted expression toward genital fat pad adult (RPKM 36.4) See more
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Genomic context

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See Pate13 in Genome Data Viewer
Location:
9 A4; 9 20.52 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (35819719..35822092)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (35908423..35910796)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene prostate and testis expressed 5 Neighboring gene predicted gene 3428 Neighboring gene STARR-seq mESC enhancer starr_23775 Neighboring gene STARR-seq mESC enhancer starr_23776 Neighboring gene STARR-seq mESC enhancer starr_23777 Neighboring gene STARR-seq mESC enhancer starr_23778 Neighboring gene predicted gene 5916 Neighboring gene predicted gene 3434

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Organization, evolution and functions of the human and mouse Ly6/uPAR family genes. Loughner CL, et al. Hum Genomics, 2016 Apr 21. PMID 27098205, Free PMC Article
  2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
prostate and testis expressed protein 13
Names
prostate and testis expressed protein X

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001378222.1 → NP_001365151.1  prostate and testis expressed protein 13 isoform 1 precursor

    Status: VALIDATED

    Source sequence(s)
    AC157512
    UniProtKB/Swiss-Prot
    D3YWX3
    Related
    ENSMUSP00000135716.2, ENSMUST00000176153.2

  2. NM_001378223.1 → NP_001365152.1  prostate and testis expressed protein 13 isoform 2 precursor

    Status: VALIDATED

    Source sequence(s)
    AC157512

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    35819719..35822092
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001101442.1: Suppressed sequence

    Description
    NM_001101442.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
D3YWX3.3 GenPept UniProtKB/Swiss-Prot:D3YWX3

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials