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SPIB Spi-B transcription factor [ Bos taurus (domestic cattle) ]

Gene ID: 784460, updated on 29-Jan-2025

Summary

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Gene symbol
SPIB
Gene description
Spi-B transcription factor
See related
BGD:BT13045; Ensembl:ENSBTAG00000043953
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Also known as
B42b-like
Orthologs
human mouse all
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Genomic context

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See SPIB in Genome Data Viewer
Location:
chromosome: 18
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 18 NC_037345.1 (56573173..56579354)

Chromosome 18 - NC_037345.1Genomic Context describing neighboring genes Neighboring gene nuclear receptor subfamily 1 group H member 2 Neighboring gene DNA polymerase delta 1, catalytic subunit Neighboring gene uncharacterized LOC132342718 Neighboring gene myosin binding protein C2 Neighboring gene golgi associated RAB2 interactor 5A

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037345.1 Chromosome 18 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Dominette sequence data
  • BioProject: PRJNA294306
  • Analysis date: Tue Dec 17 08:57:05 2024

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor Spi-B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001205444.3 → NP_001192373.3  transcription factor Spi-B

    Status: PROVISIONAL

    Source sequence(s)
    NKLS02000018
    UniProtKB/TrEMBL
    F1MMZ5
    Related
    ENSBTAP00070047575.1, ENSBTAT00070077970.1
    Conserved Domains (1) summary
    smart00413
    Location:167 → 255
    ETS; erythroblast transformation specific domain

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037345.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    56573173..56579354
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059877019.1 → XP_059733002.1  transcription factor Spi-B isoform X1

  2. XM_010815109.3 → XP_010813411.1  transcription factor Spi-B isoform X2

    See identical proteins and their annotated locations for XP_010813411.1

    UniProtKB/TrEMBL
    A0AAA9SP55
    Related
    ENSBTAP00070047568.1, ENSBTAT00070077950.1
    Conserved Domains (1) summary
    smart00413
    Location:77 → 165
    ETS; erythroblast transformation specific domain
Nucleotide Protein Strain
Heading Accession and Version

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