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9530057J20Rik RIKEN cDNA 9530057J20 gene [ Mus musculus (house mouse) ]

Gene ID: 78672, updated on 17-Aug-2024

Summary

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Official Symbol
9530057J20Rikprovided by MGI
Official Full Name
RIKEN cDNA 9530057J20 geneprovided by MGI
Primary source
MGI:MGI:1925922
See related
AllianceGenome:MGI:1925922
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm31371
Expression
Biased expression in testis adult (RPKM 59.5) and frontal lobe adult (RPKM 3.1) See more
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Genomic context

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See 9530057J20Rik in Genome Data Viewer
Location:
8 A2; 8
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (20478979..20510931)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (19903378..19935330)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene cadherin 11 pseudogene Neighboring gene STARR-seq mESC enhancer starr_20874 Neighboring gene NSFL1 (p97) cofactor (p47) pseudogene Neighboring gene STARR-positive B cell enhancer mm9_chr8:19856799-19857099 Neighboring gene predicted gene, 40468 Neighboring gene mitochondrial import receptor subunit TOM20 homolog Neighboring gene predicted gene, 40466

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
cell surface glycoprotein 1; uncharacterized protein LOC78672

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    20478979..20510931
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030243910.1 → XP_030099770.1  cell surface glycoprotein 1

    Conserved Domains (2) summary
    PHA03247
    Location:229 → 652
    PHA03247; large tegument protein UL36; Provisional
    cl39094
    Location:2 → 50
    Ank_2; Ankyrin repeats (3 copies)
Nucleotide Protein Strain
Heading Accession and Version

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