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palm3 paralemmin 3 [ Danio rerio (zebrafish) ]

Gene ID: 790940, updated on 4-Jan-2025

Summary

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Official Symbol
palm3provided by ZNC
Official Full Name
paralemmin 3provided by ZNC
Primary source
ZFIN:ZDB-GENE-061215-74
See related
Ensembl:ENSDARG00000071215 AllianceGenome:ZFIN:ZDB-GENE-061215-74
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:158252
Summary
Predicted to act upstream of or within regulation of cell shape. Predicted to be located in membrane. Orthologous to human PALM3 (paralemmin 3). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
all
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Genomic context

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See palm3 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (7977596..8075517)
105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (7742072..7839978)

Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene myosin, heavy chain 9a, non-muscle Neighboring gene phospholipid phosphatase related 2b Neighboring gene uncharacterized LOC137495917 Neighboring gene MISP family member 3 Neighboring gene Kruppel like factor 1 (erythroid)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Evolution of the vertebrate paralemmin gene family: ancient origin of gene duplicates suggests distinct functions. Hultqvist G, et al. PLoS One, 2012. PMID 22855693, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
acts_upstream_of_or_within regulation of cell shape IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
paralemmin-3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001080085.1 → NP_001073554.1  paralemmin-3

    See identical proteins and their annotated locations for NP_001073554.1

    Status: PREDICTED

    Source sequence(s)
    BC128825
    UniProtKB/TrEMBL
    A1A5V2
    Related
    ENSDARP00000101116.2, ENSDART00000112290.4
    Conserved Domains (1) summary
    pfam03879
    Location:2 → 54
    Cgr1; Cgr1 family

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007117.7 Reference GRCz11 Primary Assembly

    Range
    7977596..8075517
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021476937.2 → XP_021332612.1  paralemmin-3 isoform X1

    UniProtKB/TrEMBL
    A0A8M9PMA1
    Conserved Domains (1) summary
    pfam03879
    Location:2 → 54
    Cgr1; Cgr1 family
Nucleotide Protein Strain
Heading Accession and Version

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