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Gscdt goosecoid homeobox divergent transcript [ Mus musculus (house mouse) ]

Gene ID: 791311, updated on 9-Dec-2024

Summary

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Official Symbol
Gscdtprovided by MGI
Official Full Name
goosecoid homeobox divergent transcriptprovided by MGI
Primary source
MGI:MGI:3641968
See related
AllianceGenome:MGI:3641968
Gene type
ncRNA
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
DIGIT; Gm1000; Gm10000
Summary
Is expressed in embryo. [provided by Alliance of Genome Resources, Dec 2024]
Expression
Low expression observed in reference dataset See more
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Genomic context

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See Gscdt in Genome Data Viewer
Location:
12 E; 12 54.33 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (104439789..104497593)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (104473530..104531334)

Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_33139 Neighboring gene predicted gene, 40562 Neighboring gene STARR-seq mESC enhancer starr_33142 Neighboring gene goosecoid homeobox Neighboring gene predicted gene, 53760 Neighboring gene predicted gene, 31573

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. lncRNA DIGIT and BRD3 protein form phase-separated condensates to regulate endoderm differentiation. Daneshvar K, et al. Nat Cell Biol, 2020 Oct. PMID 32895492, Free PMC Article
  2. DIGIT Is a Conserved Long Noncoding RNA that Regulates GSC Expression to Control Definitive Endoderm Differentiation of Embryonic Stem Cells. Daneshvar K, et al. Cell Rep, 2016 Oct 4. PMID 27705785, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000078.7 Reference GRCm39 C57BL/6J

    Range
    104439789..104497593
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_381874.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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