U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

znf271 zinc finger protein 271 [ Danio rerio (zebrafish) ]

Gene ID: 793549, updated on 4-Jan-2025

Summary

Go to the top of the page Help
Official Symbol
znf271provided by ZNC
Official Full Name
zinc finger protein 271provided by ZNC
Primary source
ZFIN:ZDB-GENE-091204-74
See related
Ensembl:ENSDARG00000012642 AllianceGenome:ZFIN:ZDB-GENE-091204-74
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
Peg3; zfp271; wu:fb98d12; si:ch211-266d19.4
Summary
Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See znf271 in Genome Data Viewer
Location:
chromosome: 24
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 24 NC_007135.7 (2318385..2340937)
105 previous assembly GRCz10 (GCF_000002035.5) 24 NC_007135.6 (2322341..2347762)

Chromosome 24 - NC_007135.7Genomic Context describing neighboring genes Neighboring gene par-3 family cell polarity regulator alpha, a Neighboring gene uncharacterized LOC137489200 Neighboring gene cullin 2 Neighboring gene ras responsive element binding protein 1a Neighboring gene lymphocyte antigen 86

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Molecular codes and in vitro generation of hypocretin and melanin concentrating hormone neurons. Seifinejad A, et al. Proc Natl Acad Sci U S A, 2019 Aug 20. PMID 31375626, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

Go to the top of the page Help
Preferred Names
uncharacterized protein LOC793549; zinc finger protein 271

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007135.7 Reference GRCz11 Primary Assembly

    Range
    2318385..2340937
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009297216.4 → XP_009295491.1  zinc finger protein 271 isoform X2

    UniProtKB/TrEMBL
    A0A8M3AND1, E9QG35
    Related
    ENSDARP00000115548.2, ENSDART00000132530.3
    Conserved Domains (4) summary
    COG5048
    Location:28 → 508
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:947 → 967
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:151 → 169
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:322 → 346
    zf-H2C2_2; Zinc-finger double domain

  2. XM_001333296.6 → XP_001333332.1  zinc finger protein 271 isoform X1

    UniProtKB/TrEMBL
    A0A2R8QGS5, A0A8M1PYS3
    Related
    ENSDARP00000152230.1, ENSDART00000186328.1
    Conserved Domains (4) summary
    COG5048
    Location:28 → 508
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:947 → 967
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:151 → 169
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:322 → 346
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.