zgc:174702 zgc:174702 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: zgc:174702provided by ZNC
Official Full Name: zgc:174702provided by ZNC
Primary source: ZFIN:ZDB-GENE-080208-6
See related: Ensembl:ENSDARG00000105306 AllianceGenome:ZFIN:ZDB-GENE-080208-6
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary: Predicted to enable metal ion binding activity. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

Location:: chromosome: 4

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	4	NC_007115.7 (52614584..52621665, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	4	NC_007115.6 (50684299..50691463, complement)

Chromosome 4 - NC_007115.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info

General protein information

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Preferred Names: uncharacterized protein LOC798067

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001386853.1 → NP_001373782.1 uncharacterized protein LOC798067

Status: VALIDATED

Source sequence(s)

BX640584

UniProtKB/TrEMBL

A0A8M2BFH2, E7F8Q1, E9QB11, E9QC03

Related

ENSDARP00000123486.2, ENSDART00000137064.3

Conserved Domains (3) summary

COG5048
Location:115 → 361

COG5048; FOG: Zn-finger [General function prediction only]

sd00017
Location:106 → 126

ZF_C2H2; C2H2 Zn finger [structural motif]

pfam00096
Location:352 → 374

zf-C2H2; Zinc finger, C2H2 type

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007115.7 Reference GRCz11 Primary Assembly

Range

52614584..52621665 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

NM_001111228.1: Suppressed sequence

Description

NM_001111228.1: This RefSeq was suppressed temporarily based on the calculation that the encoded protein was shorter than proteins from the putative ortholog from human: ZNF808 (GeneID:388558).