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phospho2 phosphatase, orphan 2 [ Danio rerio (zebrafish) ]

Gene ID: 799638, updated on 4-Jan-2025

Summary

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Official Symbol
phospho2provided by ZNC
Official Full Name
phosphatase, orphan 2provided by ZNC
Primary source
ZFIN:ZDB-GENE-080204-104
See related
Ensembl:ENSDARG00000102202 AllianceGenome:ZFIN:ZDB-GENE-080204-104
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:172082
Summary
Predicted to enable phosphatase activity. Orthologous to human PHOSPHO2 (phosphatase, orphan 2). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
all
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Genomic context

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See phospho2 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (3710706..3713117)
105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (3549822..3552297)

Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene kelch-like family member 41b Neighboring gene peptidylprolyl isomerase G (cyclophilin G) Neighboring gene small RNA binding exonuclease protection factor La Neighboring gene Sp5 transcription factor b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Structure, evolution and expression of collagen XXVIII: Lessons from the zebrafish. Gebauer JM, et al. Matrix Biol, 2016 Jan. PMID 26235539
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables phosphatase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables phosphatase activity IEA
Inferred from Electronic Annotation
more info
  
enables pyridoxal phosphatase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
pyridoxal phosphate phosphatase PHOSPHO2
NP_001104699.1
XP_005172133.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001111229.1 → NP_001104699.1  pyridoxal phosphate phosphatase PHOSPHO2

    Status: PROVISIONAL

    Source sequence(s)
    BC155600
    UniProtKB/TrEMBL
    A0A8M1NFI2, A9JRB9
    Related
    ENSDARP00000134116.1, ENSDART00000170781.2
    Conserved Domains (1) summary
    cl21460
    Location:3 → 240
    HAD_like; Haloacid Dehalogenase-like Hydrolases

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007117.7 Reference GRCz11 Primary Assembly

    Range
    3710706..3713117
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005172076.5 → XP_005172133.2  pyridoxal phosphate phosphatase PHOSPHO2 isoform X1

    UniProtKB/TrEMBL
    A0A8M1NFI2, A9JRB9
    Conserved Domains (1) summary
    cl21460
    Location:3 → 240
    HAD_like; Haloacid Dehalogenase-like Hydrolases
Nucleotide Protein
Heading Accession and Version

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