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LOC8057843 probable 26S proteasome non-ATPase regulatory subunit 3 [ Sorghum bicolor (sorghum) ]

Gene ID: 8057843, updated on 22-Oct-2023

Summary

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Gene symbol
LOC8057843
Gene description
probable 26S proteasome non-ATPase regulatory subunit 3
Locus tag
SORBI_3007G176200
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorghum bicolor
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Genomic context

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See LOC8057843 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
8
Annotation release Status Assembly Chr Location
101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 7 NC_012876.2 (61004081..61008104)

Chromosome 7 - NC_012876.2Genomic Context describing neighboring genes Neighboring gene protein DETOXIFICATION 33 Neighboring gene protein DETOXIFICATION 33 Neighboring gene stigma-specific STIG1-like protein 4 Neighboring gene stigma-specific STIG1-like protein 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012876.2 Chromosome 7 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables enzyme regulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of proteasome complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of proteasome regulatory particle, lid subcomplex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable 26S proteasome non-ATPase regulatory subunit 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Genomic

  1. NC_012876.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Range
    61004081..61008104
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002444573.2 → XP_002444618.1  probable 26S proteasome non-ATPase regulatory subunit 3

    See identical proteins and their annotated locations for XP_002444618.1

    UniProtKB/TrEMBL
    A0A921QL13, C5YH21
    Conserved Domains (2) summary
    pfam01399
    Location:320 → 426
    PCI; PCI domain
    pfam08375
    Location:429 → 486
    Rpn3_C; Proteasome regulatory subunit C-terminal
Nucleotide Protein
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