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LOC8060802 protein IWS1 homolog 1 [ Sorghum bicolor (sorghum) ]

Gene ID: 8060802, updated on 22-Oct-2023

Summary

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Gene symbol
LOC8060802
Gene description
protein IWS1 homolog 1
Locus tag
SORBI_3003G073000
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorghum bicolor
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Genomic context

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See LOC8060802 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
11
Annotation release Status Assembly Chr Location
101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 3 NC_012872.2 (6193279..6198013, complement)

Chromosome 3 - NC_012872.2Genomic Context describing neighboring genes Neighboring gene factor of DNA methylation 2 Neighboring gene RHOMBOID-like protein 1 Neighboring gene uncharacterized LOC110434103 Neighboring gene uncharacterized LOC110433267

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012872.2 Chromosome 3 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in brassinosteroid mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription elongation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein IWS1 homolog 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Genomic

  1. NC_012872.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Range
    6193279..6198013 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002457323.2 → XP_002457368.1  protein IWS1 homolog 1

    See identical proteins and their annotated locations for XP_002457368.1

    UniProtKB/TrEMBL
    A0A921RBD4, C5XQ13
    Conserved Domains (1) summary
    cl00146
    Location:259 → 476
    TFIIS_I; N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials