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LOC8065609 pre-mRNA-splicing factor syf2 [ Sorghum bicolor (sorghum) ]

Gene ID: 8065609, updated on 22-Oct-2023

Summary

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Gene symbol
LOC8065609
Gene description
pre-mRNA-splicing factor syf2
Locus tag
SORBI_3010G260500
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorghum bicolor
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Genomic context

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See LOC8065609 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
5
Annotation release Status Assembly Chr Location
101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 10 NC_012879.2 (59706328..59708864)

Chromosome 10 - NC_012879.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC8065608 Neighboring gene probable ribonuclease P/MRP protein subunit POP5 Neighboring gene calcium and calcium/calmodulin-dependent serine/threonine-protein kinase Neighboring gene F-box/kelch-repeat protein SKIP25

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012879.2 Chromosome 10 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
part_of Prp19 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of post-mRNA release spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pre-mRNA-splicing factor syf2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Genomic

  1. NC_012879.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Range
    59706328..59708864
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002437533.2 → XP_002437578.1  pre-mRNA-splicing factor syf2

    See identical proteins and their annotated locations for XP_002437578.1

    UniProtKB/TrEMBL
    A0A921Q8B0, C5Z9E6
    Conserved Domains (1) summary
    pfam08231
    Location:199 → 346
    SYF2; SYF2 splicing factor
Nucleotide Protein
Heading Accession and Version

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