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LOC8074668 DNA polymerase delta catalytic subunit [ Sorghum bicolor (sorghum) ]

Gene ID: 8074668, updated on 22-Oct-2023

Summary

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Gene symbol
LOC8074668
Gene description
DNA polymerase delta catalytic subunit
Locus tag
SORBI_3004G049200
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorghum bicolor
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Genomic context

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See LOC8074668 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
30
Annotation release Status Assembly Chr Location
101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 4 NC_012873.2 (3968663..3979490)

Chromosome 4 - NC_012873.2Genomic Context describing neighboring genes Neighboring gene putative calcium-binding protein CML23 Neighboring gene putative F-box/FBD/LRR-repeat protein At2g05300 Neighboring gene sugar carrier protein C Neighboring gene uncharacterized LOC8074670

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012873.2 Chromosome 4 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3'-5'-DNA exonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-directed DNA polymerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA replication proofreading IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA-templated DNA replication IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in base-excision repair, gap-filling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nucleotide-excision repair, DNA gap filling IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of delta DNA polymerase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA polymerase delta catalytic subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Genomic

  1. NC_012873.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Range
    3968663..3979490
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002451536.2 → XP_002451581.1  DNA polymerase delta catalytic subunit

    See identical proteins and their annotated locations for XP_002451581.1

    UniProtKB/TrEMBL
    A0A921QVC9, A0A921UJ76, C5XVE8
    Conserved Domains (1) summary
    PTZ00166
    Location:101 → 1100
    PTZ00166; DNA polymerase delta catalytic subunit; Provisional
Nucleotide Protein
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