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LOC8078694 structural maintenance of chromosomes protein 2-1 [ Sorghum bicolor (sorghum) ]

Gene ID: 8078694, updated on 22-Oct-2023

Summary

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Gene symbol
LOC8078694
Gene description
structural maintenance of chromosomes protein 2-1
Locus tag
SORBI_3003G393100
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorghum bicolor
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Genomic context

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See LOC8078694 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
21
Annotation release Status Assembly Chr Location
101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 3 NC_012872.2 (70415516..70426961, complement)

Chromosome 3 - NC_012872.2Genomic Context describing neighboring genes Neighboring gene uncharacterized protein slr0889 Neighboring gene uncharacterized LOC8056129 Neighboring gene peptidyl serine alpha-galactosyltransferase Neighboring gene two-component response regulator ORR26

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012872.2 Chromosome 3 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Resolution of deep angiosperm phylogeny using conserved nuclear genes and estimates of early divergence times. Zeng L, et al. Nat Commun, 2014 Sep 24. PMID 25249442, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromosome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chromosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
structural maintenance of chromosomes protein 2-1
Names
structural maintenance of chromosomes protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Genomic

  1. NC_012872.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Range
    70415516..70426961 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002458894.2 → XP_002458939.1  structural maintenance of chromosomes protein 2-1

    See identical proteins and their annotated locations for XP_002458939.1

    UniProtKB/TrEMBL
    A0A921RHY0, C5XFG9
    Conserved Domains (6) summary
    cd03273
    Location:1 → 156
    ABC_SMC2_euk; ATP-binding cassette domain of eukaryotic SMC2 proteins
    smart00968
    Location:520 → 637
    SMC_hinge; SMC proteins Flexible Hinge Domain
    COG1196
    Location:1 → 1168
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam08581
    Location:862 → 924
    Tup_N; Tup N-terminal
    cl21455
    Location:1073 → 1167
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    cl23720
    Location:784 → 866
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)
Nucleotide Protein
Heading Accession and Version

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