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LOC8082642 probable diphthine methyl ester synthase [ Sorghum bicolor (sorghum) ]

Gene ID: 8082642, updated on 22-Oct-2023

Summary

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Gene symbol
LOC8082642
Gene description
probable diphthine methyl ester synthase
Locus tag
SORBI_3001G368800
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorghum bicolor
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Genomic context

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See LOC8082642 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
6
Annotation release Status Assembly Chr Location
101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 1 NC_012870.2 (65736211..65738976)

Chromosome 1 - NC_012870.2Genomic Context describing neighboring genes Neighboring gene sanguinarine reductase Neighboring gene uncharacterized LOC8082641 Neighboring gene protein IQ-DOMAIN 14 Neighboring gene beta-adaptin-like protein C

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012870.2 Chromosome 1 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables diphthine synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein histidyl modification to diphthamide IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable diphthine methyl ester synthase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Genomic

  1. NC_012870.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Range
    65736211..65738976
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002465218.2 → XP_002465263.1  probable diphthine methyl ester synthase

    See identical proteins and their annotated locations for XP_002465263.1

    UniProtKB/TrEMBL
    A0A921S3V0, C5WZQ7
    Conserved Domains (1) summary
    PTZ00175
    Location:1 → 272
    PTZ00175; diphthine synthase; Provisional
Nucleotide Protein
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