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LOC8086033 serine/arginine-rich SC35-like splicing factor SCL30 [ Sorghum bicolor (sorghum) ]

Gene ID: 8086033, updated on 22-Oct-2023

Summary

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Gene symbol
LOC8086033
Gene description
serine/arginine-rich SC35-like splicing factor SCL30
Locus tag
SORBI_3005G229000
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorghum bicolor
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Also known as
SCL31
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Genomic context

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See LOC8086033 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
8
Annotation release Status Assembly Chr Location
101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 5 NC_012874.2 (71620396..71625029, complement)

Chromosome 5 - NC_012874.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC8076371 Neighboring gene glucan endo-1,3-beta-glucosidase Neighboring gene protein ALTERED XYLOGLUCAN 4 Neighboring gene RHOMBOID-like protein 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012874.2 Chromosome 5 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine/arginine-rich SC35-like splicing factor SCL30
Names
arginine/serine-rich splicing factor SCL31

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Genomic

  1. NC_012874.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Range
    71620396..71625029 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002451276.2 → XP_002451321.1  serine/arginine-rich SC35-like splicing factor SCL30

    See identical proteins and their annotated locations for XP_002451321.1

    UniProtKB/TrEMBL
    A0A921R0N1, C5Y8K9
    Conserved Domains (1) summary
    cl17169
    Location:41 → 123
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein
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