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putative RNA-binding protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 814840, updated on 18-Sep-2024

Summary

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Official Full Name
putative RNA-binding protein
Primary source
TAIR:AT2G03110
Locus tag
AT2G03110
See related
Araport:AT2G03110
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T18E12.22; T18E12_22
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Genomic context

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Location:
chromosome: 2
Exon count:
5
Sequence:
Chromosome: 2; NC_003071.7 (934787..936862)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene pseudo Neighboring gene signal peptide peptidase Neighboring gene Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001335158.1
NM_126362.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
putative RNA-binding protein
NP_001318188.1
  • RNA binding;nucleic acid binding; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT1G14170.3); Has 983 Blast hits to 801 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 424; Fungi - 55; Plants - 493; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    934787..936862
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001335159.1 → NP_001323851.1  putative RNA-binding protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q6NLG5

  2. NM_001335158.1 → NP_001318188.1  putative RNA-binding protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q6NLG5

  3. NM_126362.2 → NP_178410.2  putative RNA-binding protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_178410.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q6NLG5
    Conserved Domains (1) summary
    cd02396
    Location:74 → 143
    PCBP_like_KH; K homology RNA-binding domain, PCBP_like. Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are ...
Nucleotide Protein
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