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DNA-binding protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 814856, updated on 18-Sep-2024

Summary

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Official Full Name
DNA-binding protein
Primary source
TAIR:AT2G03270
Locus tag
AT2G03270
See related
Araport:AT2G03270
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T4M8.30; T4M8_30
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Genomic context

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Location:
chromosome: 2
Exon count:
2
Sequence:
Chromosome: 2; NC_003071.7 (993748..996128)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene EXS (ERD1/XPR1/SYG1) family protein Neighboring gene EXS (ERD1/XPR1/SYG1) family protein Neighboring gene O-fucosyltransferase family protein Neighboring gene emp24/gp25L/p24 family/GOLD family protein Neighboring gene miscRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
  2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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NM_126378.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
DNA-binding protein
NP_565299.1
  • DNA-binding protein, putative; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, DNA binding, nucleotide binding, ATP binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), DNA helicase, putative (InterPro:IPR004483), DEAD-like helicase, N-terminal (InterPro:IPR014001); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G35970.1); Has 6736 Blast hits to 5857 proteins in 1106 species: Archae - 209; Bacteria - 2506; Metazoa - 1275; Fungi - 1034; Plants - 659; Viruses - 7; Other Eukaryotes - 1046 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    993748..996128
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_126378.4 → NP_565299.1  DNA-binding protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565299.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VP62, O81047, Q94AT0, Q9FNX9
    Conserved Domains (3) summary
    TIGR00376
    Location:20 → 636
    TIGR00376; DNA helicase, putative
    pfam13087
    Location:412 → 610
    AAA_12; AAA domain
    pfam13245
    Location:196 → 253
    AAA_19; Part of AAA domain
Nucleotide Protein
Heading Accession and Version

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