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18S pre-ribosomal assembly protein gar2-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 814907, updated on 18-Sep-2024

Summary

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Official Full Name
18S pre-ribosomal assembly protein gar2-like protein
Primary source
TAIR:AT2G03810
Locus tag
AT2G03810
See related
Araport:AT2G03810
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T18C20.1; T18C20_1
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Genomic context

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Location:
chromosome: 2
Exon count:
6
Sequence:
Chromosome: 2; NC_003071.7 (1160947..1164657)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene tRNA-Val Neighboring gene D-aminoacyl-tRNA deacylase Neighboring gene nonsense-mediated mRNA decay NMD3 family protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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NM_001035889.3
NM_001124788.2
NM_001335204.1
NM_001335205.1
NM_001335206.1
NM_126427.4
NM_201683.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in regulation of asymmetric cell division IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in plasma membrane ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
18S pre-ribosomal assembly protein gar2-like protein
NP_001030966.1
  • 18S pre-ribosomal assembly protein gar2-related; FUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cotyledon; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13650.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_001118260.1
  • 18S pre-ribosomal assembly protein gar2-related; FUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cotyledon; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_001318194.1
  • 18S pre-ribosomal assembly protein gar2-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: cotyledon; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13650.1); Has 7945 Blast hits to 4358 proteins in 575 species: Archae - 23; Bacteria - 2851; Metazoa - 1872; Fungi - 665; Plants - 238; Viruses - 54; Other Eukaryotes - 2242 (source: NCBI BLink).
NP_973412.1
  • 18S pre-ribosomal assembly protein gar2-related; FUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cotyledon; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13650.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    1160947..1164657
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001124788.2 → NP_001118260.1  18S pre-ribosomal assembly protein gar2-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001118260.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VVI5, A0A384KJ81, A0A5S9WX87, A0A654ERM9, F4ITB8, Q58G30
    Conserved Domains (1) summary
    COG5271
    Location:115 → 368
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]

  2. NM_001335204.1 → NP_001318194.1  18S pre-ribosomal assembly protein gar2-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VVI5, A0A384KJ81, A0A5S9WX87, A0A654ERM9, F4ITB8, Q58G30
    Conserved Domains (1) summary
    COG5271
    Location:115 → 368
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]

  3. NM_001335205.1 → NP_001324260.1  18S pre-ribosomal assembly protein gar2-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VVI5, A0A384KJ81, A0A5S9WX87, A0A654ERM9, F4ITB8, Q58G30
    Conserved Domains (1) summary
    COG5271
    Location:115 → 368
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]

  4. NM_201683.3 → NP_973412.1  18S pre-ribosomal assembly protein gar2-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_973412.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VVI5, A0A384KJ81, A0A5S9WX87, A0A654ERM9, F4ITB8, Q58G30
    Conserved Domains (1) summary
    COG5271
    Location:115 → 368
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]

  5. NM_001035889.3 → NP_001030966.1  18S pre-ribosomal assembly protein gar2-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001030966.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VVI5, A0A384KJ81, A0A5S9WX87, A0A654ERM9, F4ITB8, Q58G30
    Conserved Domains (1) summary
    COG5271
    Location:115 → 368
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]

  6. NM_126427.4 → NP_178475.2  18S pre-ribosomal assembly protein gar2-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_178475.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VVI5, A0A384KJ81, A0A5S9WX87, A0A654ERM9, F4ITB8, Q58G30
    Conserved Domains (1) summary
    COG5271
    Location:115 → 368
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]

  7. NM_001335206.1 → NP_001324261.1  18S pre-ribosomal assembly protein gar2-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VVI5, A0A384KJ81, A0A5S9WX87, A0A654ERM9, F4ITB8, Q58G30
    Conserved Domains (1) summary
    COG5271
    Location:115 → 368
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
Nucleotide Protein
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