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XTH4 xyloglucan endotransglucosylase/hydrolase 4 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 815247, updated on 18-Sep-2024

Summary

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Official Symbol
XTH4
Official Full Name
xyloglucan endotransglucosylase/hydrolase 4
Primary source
TAIR:AT2G06850
Locus tag
AT2G06850
See related
Araport:AT2G06850
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ENDOXYLOGLUCAN TRANSFERASE; endoxyloglucan transferase A1; EXGT-A1; EXT; T9F8.4; T9F8_4; xyloglucan endotransglucosylase/hydrolase 4
Summary
endoxyloglucan transferase (EXGT-A1) gene
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Genomic context

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See XTH4 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
4
Sequence:
Chromosome: 2; NC_003071.7 (2763449..2765743)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene ncRNA Neighboring gene Beta-galactosidase related protein Neighboring gene pseudo Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Arabidopsis XET-related gene family: environmental and hormonal regulation of expression. Xu W, et al. Plant J, 1996 Jun. PMID 8696366
  2. Endo-xyloglucan transferase, a novel class of glycosyltransferase that catalyzes transfer of a segment of xyloglucan molecule to another xyloglucan molecule. Nishitani K, et al. J Biol Chem, 1992 Oct 15. PMID 1400418
  3. Arabidopsis XTH4 and XTH9 Contribute to Wood Cell Expansion and Secondary Wall Formation. Kushwah S, et al. Plant Physiol, 2020 Apr. PMID 32005783, Free PMC Article
  4. Expression of endoxyloglucan transferase genes in acaulis mutants of Arabidopsis. Akamatsu T, et al. Plant Physiol, 1999 Nov. PMID 10557219, Free PMC Article
  5. Cell wall proteins in apoplastic fluids of Arabidopsis thaliana rosettes: identification by mass spectrometry and bioinformatics. Boudart G, et al. Proteomics, 2005 Jan. PMID 15593128

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001335308.1
NM_126666.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
  
enables polysaccharide binding ISS
Inferred from Sequence or Structural Similarity
more info
  
enables xyloglucan:xyloglucosyl transferase activity IEA
Inferred from Electronic Annotation
more info
  
enables xyloglucan:xyloglucosyl transferase activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables xyloglucan:xyloglucosyl transferase activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within plant-type secondary cell wall biogenesis IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within response to auxin IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within response to low light intensity stimulus IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within response to mechanical stimulus IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within unidimensional cell growth IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within xylem development IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in xyloglucan metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm HDA PubMed 
located_in extracellular region IDA
Inferred from Direct Assay
more info
 PubMed 
located_in extracellular region ISM
Inferred from Sequence Model
more info
  
located_in mitochondrion HDA PubMed 
located_in plant-type cell wall HDA PubMed 
located_in plasmodesma HDA PubMed 

General protein information

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Preferred Names
xyloglucan endotransglucosylase/hydrolase 4
NP_178708.1
  • xyloglucan endotransglucosylase/hydrolase 4 (XTH4); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: response to auxin stimulus, response to mechanical stimulus, response to low light intensity stimulus, unidimensional cell growth; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Beta-glucanase (InterPro:IPR008264), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Glycoside hydrolase, family 16, active site (InterPro:IPR008263), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 5 (TAIR:AT5G13870.1); Has 2146 Blast hits to 2126 proteins in 304 species: Archae - 0; Bacteria - 263; Metazoa - 0; Fungi - 414; Plants - 1383; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    2763449..2765743
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_126666.4 → NP_178708.1  xyloglucan endotransglucosylase/hydrolase 4 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_178708.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q39099, Q94F33
    UniProtKB/TrEMBL
    A0A178VUP5, A0A5S9WXJ0
    Conserved Domains (1) summary
    cd02176
    Location:30 → 290
    GH16_XET; Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16

  2. NM_001335308.1 → NP_001325140.1  xyloglucan endotransglucosylase/hydrolase 4 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B288, B9DI24
    Conserved Domains (1) summary
    cd02176
    Location:4 → 230
    GH16_XET; Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q39099.1

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