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SCPL43 serine carboxypeptidase-like 43 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 815721, updated on 18-Sep-2024

Summary

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Official Symbol
SCPL43
Official Full Name
serine carboxypeptidase-like 43
Primary source
TAIR:AT2G12480
Locus tag
AT2G12480
See related
Araport:AT2G12480
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
serine carboxypeptidase-like 43; T27D6.5; T27D6_5
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Genomic context

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See SCPL43 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
11
Sequence:
Chromosome: 2; NC_003071.7 (5069544..5072656, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene Defensin-like (DEFL) family protein Neighboring gene pseudo Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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NM_001036274.1
NM_126893.4

Gene Ontology Provided by TAIR

Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
serine carboxypeptidase-like 43
NP_001031351.1
  • serine carboxypeptidase-like 43 (SCPL43); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 42 (TAIR:AT5G42240.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_178937.2
  • serine carboxypeptidase-like 43 (SCPL43); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 42 (TAIR:AT5G42240.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    5069544..5072656 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001335381.1 → NP_001323739.1  serine carboxypeptidase-like 43 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AXY2, A0A654F3F6, A0A7G2E985

  2. NM_001335380.1 → NP_001323740.1  serine carboxypeptidase-like 43 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VZ32, A0A1P8AY06

  3. NM_126893.4 → NP_178937.2  serine carboxypeptidase-like 43 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_178937.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q84W27, Q9SHU3
    UniProtKB/TrEMBL
    A0A654F3F6, A0A7G2E985
    Conserved Domains (1) summary
    pfam00450
    Location:36 → 427
    Peptidase_S10; Serine carboxypeptidase

  4. NM_001036274.1 → NP_001031351.1  serine carboxypeptidase-like 43 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031351.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654F3F6, A0A7G2E985, F4ITD3
    Conserved Domains (1) summary
    pfam00450
    Location:36 → 428
    Peptidase_S10; Serine carboxypeptidase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q84W27.1

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