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COR413-PM1 cold regulated 413 plasma membrane 1 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816092, updated on 18-Sep-2024

Summary

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Official Symbol
COR413-PM1
Official Full Name
cold regulated 413 plasma membrane 1
Primary source
TAIR:AT2G15970
Locus tag
AT2G15970
See related
Araport:AT2G15970
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ARABIDOPSIS THALIANA COLD-REGULATED413 PLASMA MEMBRANE 1; ATCOR413-PM1; ATCYP19; COLD ACCLIMATION PROTEIN WCOR413-LIKE PROTEIN ALPHA FORM; cold regulated 413 plasma membrane 1; CYCLOPHILLIN 19; F19G14.3; F19G14_3; FL3-5A3; WCOR413; WCOR413-LIKE
Summary
encodes an alpha form of a protein similar to the cold acclimation protein WCOR413 in wheat. Expression is induced by short-term cold-treatment, water deprivation, and abscisic acid treatment.
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Genomic context

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See COR413-PM1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
4
Sequence:
Chromosome: 2; NC_003071.7 (6949851..6951192)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene tRNA-Tyr Neighboring gene stress-induced protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Expression profiling and bioinformatic analyses of a novel stress-regulated multispanning transmembrane protein family from cereals and Arabidopsis. Breton G, et al. Plant Physiol, 2003 May. PMID 12746512, Free PMC Article
  2. An abscisic acid-responsive protein interaction network for sucrose non-fermenting related kinase1 in abiotic stress response. Carianopol CS, et al. Commun Biol, 2020 Mar 26. PMID 32218501, Free PMC Article
  3. A mesoscale abscisic acid hormone interactome reveals a dynamic signaling landscape in Arabidopsis. Lumba S, et al. Dev Cell, 2014 May 12. PMID 24823379
  4. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
  5. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001202604.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cellular response to water deprivation IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within cold acclimation IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within response to abscisic acid IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  
located_in plant-type vacuole HDA PubMed 
located_in plasma membrane ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 

General protein information

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Preferred Names
cold regulated 413 plasma membrane 1
NP_001189533.1
  • cold regulated 413 plasma membrane 1 (COR413-PM1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cold acclimation, cellular response to water deprivation, response to abscisic acid stimulus; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cold acclimation WCOR413 (InterPro:IPR008892); BEST Arabidopsis thaliana protein match is: Cold acclimation protein WCOR413 family (TAIR:AT4G37220.1).
NP_179196.1
  • cold regulated 413 plasma membrane 1 (COR413-PM1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cold acclimation, cellular response to water deprivation, response to abscisic acid stimulus; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cold acclimation WCOR413 (InterPro:IPR008892); BEST Arabidopsis thaliana protein match is: Cold acclimation protein WCOR413 family (TAIR:AT4G37220.1); Has 153 Blast hits to 150 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 153; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    6949851..6951192
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_127156.4 → NP_179196.1  cold regulated 413 plasma membrane 1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_179196.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9XIM7
    UniProtKB/TrEMBL
    A0A178VY40, A0A5S9WYF3
    Conserved Domains (1) summary
    pfam05562
    Location:15 → 187
    WCOR413; Cold acclimation protein WCOR413

  2. NM_001202604.1 → NP_001189533.1  cold regulated 413 plasma membrane 1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001189533.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4IJE6
    Conserved Domains (1) summary
    pfam05562
    Location:15 → 154
    WCOR413; Cold acclimation protein WCOR413
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9XIM7.1

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