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hAT dimerization domain-containing protein / transposase-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816101, updated on 18-Sep-2024

Summary

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Official Full Name
hAT dimerization domain-containing protein / transposase-like protein
Primary source
TAIR:AT2G16040
Locus tag
AT2G16040
See related
Araport:AT2G16040
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F7H1.6; F7H1_6
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Genomic context

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Location:
chromosome: 2
Exon count:
2
Sequence:
Chromosome: 2; NC_003071.7 (6976017..6977683)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene ncRNA Neighboring gene Cysteine/Histidine-rich C1 domain family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
hAT dimerization domain-containing protein / transposase-like protein
NP_179202.1
  • hAT dimerisation domain-containing protein / transposase-related; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906); BEST Arabidopsis thaliana protein match is: hAT family dimerisation domain (TAIR:AT2G06500.1); Has 701 Blast hits to 553 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 491; Fungi - 0; Plants - 207; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    6976017..6977683
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_127163.2 → NP_179202.1  hAT dimerization domain-containing protein / transposase-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_179202.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9WYC5, Q9XII3
    Conserved Domains (2) summary
    pfam05699
    Location:298 → 382
    Dimer_Tnp_hAT; hAT family C-terminal dimerization region
    pfam14291
    Location:22 → 100
    DUF4371; Domain of unknown function (DUF4371)
Nucleotide Protein
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