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phospholipase-like protein (PEARLI 4) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816192, updated on 18-Sep-2024

Summary

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Official Full Name
phospholipase-like protein (PEARLI 4) family protein
Primary source
TAIR:AT2G16900
Locus tag
AT2G16900
See related
Araport:AT2G16900
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F12A24.8; F12A24_8
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Genomic context

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Location:
chromosome: 2
Exon count:
3
Sequence:
Chromosome: 2; NC_003071.7 (7323570..7326317, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene UDP-Glycosyltransferase superfamily protein Neighboring gene miscRNA Neighboring gene miscRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A DEK domain-containing protein modulates chromatin structure and function in Arabidopsis. Waidmann S, et al. Plant Cell, 2014 Nov. PMID 25387881, Free PMC Article
  2. Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana. Van Leene J, et al. Mol Syst Biol, 2010 Aug 10. PMID 20706207, Free PMC Article
  3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001084434.2
NM_001124861.2
NM_001335500.1
NM_001335501.1
NM_127243.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
phospholipase-like protein (PEARLI 4) family protein
NP_001077903.1
  • Arabidopsis phospholipase-like protein (PEARLI 4) family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase-like, arabidopsis (InterPro:IPR007942); BEST Arabidopsis thaliana protein match is: Arabidopsis phospholipase-like protein (PEARLI 4) family (TAIR:AT4G35110.3); Has 374 Blast hits to 290 proteins in 60 species: Archae - 10; Bacteria - 16; Metazoa - 42; Fungi - 12; Plants - 162; Viruses - 45; Other Eukaryotes - 87 (source: NCBI BLink).
NP_001118333.1
  • Arabidopsis phospholipase-like protein (PEARLI 4) family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase-like, arabidopsis (InterPro:IPR007942); BEST Arabidopsis thaliana protein match is: Arabidopsis phospholipase-like protein (PEARLI 4) family (TAIR:AT4G35110.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_565397.1
  • Arabidopsis phospholipase-like protein (PEARLI 4) family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase-like, arabidopsis (InterPro:IPR007942); BEST Arabidopsis thaliana protein match is: Arabidopsis phospholipase-like protein (PEARLI 4) family (TAIR:AT4G35110.2); Has 457 Blast hits to 353 proteins in 76 species: Archae - 10; Bacteria - 16; Metazoa - 75; Fungi - 22; Plants - 192; Viruses - 47; Other Eukaryotes - 95 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    7323570..7326317 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001335498.1 → NP_001324295.1  phospholipase-like protein (PEARLI 4) family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A8MRF0
    Conserved Domains (1) summary
    pfam05278
    Location:71 → 291
    PEARLI-4; Arabidopsis phospholipase-like protein (PEARLI 4)

  2. NM_001335499.1 → NP_001324294.1  phospholipase-like protein (PEARLI 4) family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654ETF3, Q94BU9, Q9ZVX3

  3. NM_127243.3 → NP_565397.1  phospholipase-like protein (PEARLI 4) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565397.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654ETF3, Q94BU9, Q9ZVX3
    Conserved Domains (1) summary
    pfam05278
    Location:160 → 380
    PEARLI-4; Arabidopsis phospholipase-like protein (PEARLI 4)

  4. NM_001335501.1 → NP_001324296.1  phospholipase-like protein (PEARLI 4) family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A8MRF0
    Conserved Domains (1) summary
    pfam05278
    Location:71 → 291
    PEARLI-4; Arabidopsis phospholipase-like protein (PEARLI 4)

  5. NM_001335500.1 → NP_001324297.1  phospholipase-like protein (PEARLI 4) family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654ETF3, Q94BU9, Q9ZVX3

  6. NM_001084434.2 → NP_001077903.1  phospholipase-like protein (PEARLI 4) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001077903.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A8MRF0
    Conserved Domains (1) summary
    pfam05278
    Location:71 → 291
    PEARLI-4; Arabidopsis phospholipase-like protein (PEARLI 4)

  7. NM_001124861.2 → NP_001118333.1  phospholipase-like protein (PEARLI 4) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001118333.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A8MRF0
    Conserved Domains (1) summary
    pfam05278
    Location:71 → 291
    PEARLI-4; Arabidopsis phospholipase-like protein (PEARLI 4)
Nucleotide Protein
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