F-box/RNI-like superfamily protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

Go to the top of the page Help

Official Full Name: F-box/RNI-like superfamily protein
Primary source: TAIR:AT2G17020
Locus tag: AT2G17020
See related: Araport:AT2G17020
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: F6P23.18; F6P23_18
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help

See in Genome Data Viewer

Location:: chromosome: 2

Exon count:: 4

Sequence:: Chromosome: 2; NC_003071.7 (7396281..7398885, complement)

Chromosome 2 - NC_003071.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:: NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

Interactions

Go to the top of the page Help

Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

Go to the top of the page Help

NM_001335529.1

Supported by ESTs:

NM_001335530.1

Supported by ESTs:

NM_127255.4

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed

Process	Evidence Code	Pubs
acts_upstream_of_or_within ubiquitin-dependent protein catabolic process	TAS Traceable Author Statement more info	PubMed

Component	Evidence Code	Pubs
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

Go to the top of the page Help

Preferred Names: F-box/RNI-like superfamily protein

NP_565400.1

F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT1G55590.1); Has 4669 Blast hits to 2409 proteins in 221 species: Archae - 0; Bacteria - 377; Metazoa - 1922; Fungi - 539; Plants - 1335; Viruses - 3; Other Eukaryotes - 493 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003071.7 Reference assembly

Range

7396281..7398885 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_127255.4 → NP_565400.1 F-box/RNI-like superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_565400.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q8LF00, Q9SDA8

UniProtKB/TrEMBL

A0A178VSD3, A0A5S9WYU4

Conserved Domains (3) summary

cd09293
Location:337 → 497

AMN1; Antagonist of mitotic exit network protein 1

sd00034
Location:328 → 353

LRR_AMN1; leucine-rich repeat [structural motif]

pfam00646
Location:22 → 60

F-box; F-box domain
NM_001335529.1 → NP_001325033.1 F-box/RNI-like superfamily protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8B1X8
NM_001335530.1 → NP_001325032.1 F-box/RNI-like superfamily protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A178VSD3, A0A1P8B1Z8, A0A5S9WYU4