U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

EMB2762 CCAAT-binding factor [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816230, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
EMB2762
Official Full Name
CCAAT-binding factor
Primary source
TAIR:AT2G17250
Locus tag
AT2G17250
See related
Araport:AT2G17250
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
EMBRYO DEFECTIVE 2762; NOC4; NucleOlar Complex associated 4; T23A1.11; T23A1_11
Summary
Encodes a nucleolar protein that is a ribosome biogenesis co-factor. Mutants display aberrant RNA processing and homozygous embryos arrest in the globular stage of development.
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See EMB2762 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
15
Sequence:
Chromosome: 2; NC_003071.7 (7499472..7503195)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene EXORDIUM like 5 Neighboring gene arginine/serine-rich-like splicing factor Neighboring gene glutamate receptor 2 Neighboring gene homoserine kinase

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. 40S ribosome biogenesis co-factors are essential for gametophyte and embryo development. Missbach S, et al. PLoS One, 2013. PMID 23382868, Free PMC Article
  2. Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis. Klopffleisch K, et al. Mol Syst Biol, 2011 Sep 27. PMID 21952135, Free PMC Article
  3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Pathways from PubChem

Go to the top of the page

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help
NM_127279.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within embryo development ending in seed dormancy IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within rRNA processing IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
CCAAT-binding factor
NP_179316.2
  • EMBRYO DEFECTIVE 2762 (EMB2762); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CCAAT-binding factor (InterPro:IPR005612); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    7499472..7503195
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_127279.3 → NP_179316.2  CCAAT-binding factor [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_179316.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4IMH3, O22737, Q8VZE1
    UniProtKB/TrEMBL
    A0A178VST8
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4IMH3.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools