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SRS4 SHI-related sequence 4 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816325, updated on 18-Sep-2024

Summary

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Official Symbol
SRS4
Official Full Name
SHI-related sequence 4
Primary source
TAIR:AT2G18120
Locus tag
AT2G18120
See related
Araport:AT2G18120
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F8D23.10; F8D23_10; SHI-related sequence 4
Summary
A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis.
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Genomic context

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See SRS4 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
2
Sequence:
Chromosome: 2; NC_003071.7 (7876544..7878072, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Translation elongation factor EF1B/ribosomal protein S6 family protein Neighboring gene miscRNA Neighboring gene purple acid phosphatase 11 Neighboring gene Peroxidase superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
  2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001335585.1
NM_127369.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in nucleus ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Preferred Names
SHI-related sequence 4
NP_179404.1
  • SHI-related sequence 4 (SRS4); CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: Lateral root primordium (LRP) protein-related (TAIR:AT4G36260.1); Has 174 Blast hits to 174 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 174; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    7876544..7878072 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_127369.3 → NP_179404.1  SHI-related sequence 4 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_179404.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SI19
    UniProtKB/TrEMBL
    A0A178VVS9
    Conserved Domains (3) summary
    TIGR01623
    Location:71 → 113
    put_zinc_LRP1; putative zinc finger domain, LRP1 type
    TIGR01624
    Location:157 → 205
    LRP1_Cterm; LRP1 C-terminal domain
    pfam05142
    Location:69 → 207
    DUF702; Domain of unknown function (DUF702)

  2. NM_001335585.1 → NP_001323479.1  SHI-related sequence 4 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VX85, A0A1P8AXA0
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SI19.1

Gene LinkOut

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