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NEP-interacting protein, putative (DUF239) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816537, updated on 18-Sep-2024

Summary

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Official Full Name
NEP-interacting protein, putative (DUF239)
Primary source
TAIR:AT2G20170
Locus tag
AT2G20170
See related
Araport:AT2G20170
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T2G17.3; T2G17_3
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Genomic context

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Location:
chromosome: 2
Exon count:
10
Sequence:
Chromosome: 2; NC_003071.7 (8701013..8704357)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein Neighboring gene phytochrome interacting factor 3-like 5 Neighboring gene CLIP-associated protein Neighboring gene RNI-like superfamily protein Neighboring gene low-molecular-weight cysteine-rich 60

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001124876.1
NM_001202629.1
NM_127576.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
NEP-interacting protein, putative (DUF239)
NP_001118348.1
  • Protein of Unknown Function (DUF239); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT4G23390.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_001189558.1
  • Protein of Unknown Function (DUF239); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT4G23390.1).
NP_179607.1
  • Protein of Unknown Function (DUF239); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT4G23390.1); Has 729 Blast hits to 673 proteins in 27 species: Archae - 0; Bacteria - 13; Metazoa - 0; Fungi - 10; Plants - 706; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    8701013..8704357
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_127576.2 → NP_179607.1  NEP-interacting protein, putative (DUF239) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_179607.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9WZU8, A0A654EUG9, Q9SL64
    Conserved Domains (2) summary
    pfam03080
    Location:172 → 395
    Neprosin
    pfam14365
    Location:50 → 159
    Neprosin_AP; Neprosin activation peptide

  2. NM_001124876.1 → NP_001118348.1  NEP-interacting protein, putative (DUF239) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001118348.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9WZU8, A0A654EUG9, Q9SL64
    Conserved Domains (2) summary
    pfam03080
    Location:172 → 395
    Neprosin
    pfam14365
    Location:50 → 159
    Neprosin_AP; Neprosin activation peptide

  3. NM_001202629.1 → NP_001189558.1  NEP-interacting protein, putative (DUF239) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001189558.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654EUG9, F4IUF5
    Conserved Domains (2) summary
    pfam03080
    Location:172 → 378
    DUF239; Domain of unknown function (DUF239)
    pfam14365
    Location:50 → 159
    DUF4409; Domain of unknown function (DUF4409)
Nucleotide Protein
Heading Accession and Version

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