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NOP10 nucleolar RNA-binding Nop10p family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816569, updated on 18-Sep-2024

Summary

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Official Symbol
NOP10
Official Full Name
nucleolar RNA-binding Nop10p family protein
Primary source
TAIR:AT2G20490
Locus tag
AT2G20490
See related
Araport:AT2G20490
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
EDA27; EMBRYO SAC DEVELOPMENT ARREST 27; T13C7.8; T13C7_8
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Genomic context

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See NOP10 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
4
Sequence:
Chromosome: 2; NC_003071.7 (8831681..8832929)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Neighboring gene uncharacterized protein Neighboring gene Serine/Threonine-kinase Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene translocase inner membrane subunit 44-1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Use of fluorescent protein tags to study nuclear organization of the spliceosomal machinery in transiently transformed living plant cells. Lorković ZJ, et al. Mol Biol Cell, 2004 Jul. PMID 15133128, Free PMC Article
  2. Genetic and molecular identification of genes required for female gametophyte development and function in Arabidopsis. Pagnussat GC, et al. Development, 2005 Feb. PMID 15634699
  3. Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions. Pendle AF, et al. Mol Biol Cell, 2005 Jan. PMID 15496452, Free PMC Article
  4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001036302.1
NM_001335686.1
NM_127608.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables snoRNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within polar nucleus fusion IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in pseudouridine synthesis IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in Cajal body IDA
Inferred from Direct Assay
more info
 PubMed 
located_in mitochondrion HDA PubMed 
located_in nucleolus HDA PubMed 
located_in nucleolus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
nucleolar RNA-binding Nop10p family protein
NP_001031379.1
  • NOP10; FUNCTIONS IN: RNA binding; INVOLVED IN: polar nucleus fusion; LOCATED IN: nucleolus, Cajal body; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: H/ACA ribonucleoprotein complex, subunit Nop10 (InterPro:IPR007264); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_565472.1
  • NOP10; FUNCTIONS IN: RNA binding; INVOLVED IN: polar nucleus fusion; LOCATED IN: nucleolus, Cajal body; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: H/ACA ribonucleoprotein complex, subunit Nop10 (InterPro:IPR007264); Has 388 Blast hits to 388 proteins in 192 species: Archae - 0; Bacteria - 0; Metazoa - 133; Fungi - 120; Plants - 61; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    8831681..8832929
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_127608.4 → NP_565472.1  nucleolar RNA-binding Nop10p family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565472.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q93XX8, Q9SIM0
    UniProtKB/TrEMBL
    A0A178VV45, A0A5S9X002
    Conserved Domains (1) summary
    pfam04135
    Location:6 → 52
    Nop10p; Nucleolar RNA-binding protein, Nop10p family

  2. NM_001335686.1 → NP_001325224.1  nucleolar RNA-binding Nop10p family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q93XX8, Q9SIM0
    UniProtKB/TrEMBL
    A0A178VV45, A0A5S9X002
    Conserved Domains (1) summary
    pfam04135
    Location:6 → 52
    Nop10p; Nucleolar RNA-binding protein, Nop10p family

  3. NM_001036302.1 → NP_001031379.1  nucleolar RNA-binding Nop10p family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031379.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4IVE5
    Conserved Domains (1) summary
    pfam04135
    Location:6 → 51
    Nop10p; Nucleolar RNA-binding protein, Nop10p family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q93XX8.2

Gene LinkOut

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