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lipid-binding protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816631, updated on 18-Sep-2024

Summary

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Official Full Name
lipid-binding protein
Primary source
TAIR:AT2G20970
Locus tag
AT2G20970
See related
Araport:AT2G20970
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F26H11.27; F26H11_27
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Genomic context

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Location:
chromosome: 2
Exon count:
3
Sequence:
Chromosome: 2; NC_003071.7 (9009867..9011067)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene transmembrane protein, putative (DUF1279) Neighboring gene phospholipase-like protein (PEARLI 4) family protein Neighboring gene phospholipase-like protein (PEARLI 4) family protein Neighboring gene minichromosome maintenance 10 Neighboring gene synaptotagmin A

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A membrane protein/signaling protein interaction network for Arabidopsis version AMPv2. Lalonde S, et al. Front Physiol, 2010. PMID 21423366, Free PMC Article
  2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001161054.1
NM_127666.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
lipid-binding protein
NP_001154526.1
  • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, sepal; EXPRESSED DURING: petal differentiation and expansion stage; Has 295 Blast hits to 269 proteins in 111 species: Archae - 15; Bacteria - 63; Metazoa - 84; Fungi - 25; Plants - 9; Viruses - 2; Other Eukaryotes - 97 (source: NCBI BLink).
NP_179693.2
  • unknown protein; Has 204 Blast hits to 188 proteins in 80 species: Archae - 7; Bacteria - 37; Metazoa - 56; Fungi - 18; Plants - 9; Viruses - 2; Other Eukaryotes - 75 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    9009867..9011067
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001161054.1 → NP_001154526.1  lipid-binding protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001154526.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9X016, A0A654EUS9, F4IFM3
    Conserved Domains (1) summary
    pfam01442
    Location:144 → 269
    Apolipoprotein; Apolipoprotein A1/A4/E domain

  2. NM_127666.2 → NP_179693.2  lipid-binding protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_179693.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0MEN6, Q1PF29
    Conserved Domains (1) summary
    pfam01442
    Location:144 → 267
    Apolipoprotein; Apolipoprotein A1/A4/E domain
Nucleotide Protein
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