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PLAT2 Lipase/lipooxygenase, PLAT/LH2 family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816751, updated on 18-Sep-2024

Summary

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Official Symbol
PLAT2
Official Full Name
Lipase/lipooxygenase, PLAT/LH2 family protein
Primary source
TAIR:AT2G22170
Locus tag
AT2G22170
See related
Araport:AT2G22170
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
PLAT domain protein 2; T26C19.17; T26C19_17
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Genomic context

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See PLAT2 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
2
Sequence:
Chromosome: 2; NC_003071.7 (9426796..9428170, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ECA1 gametogenesis family protein Neighboring gene Cysteine proteinases superfamily protein Neighboring gene hydroxyproline-rich glycoprotein family protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. High light response of the thylakoid proteome in arabidopsis wild type and the ascorbate-deficient mutant vtc2-2. A comparative proteomics study. Giacomelli L, et al. Plant Physiol, 2006 Jun. PMID 16648217, Free PMC Article
  2. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
  3. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_127785.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  
located_in secretory vesicle HDA PubMed 
located_in thylakoid HDA PubMed 
located_in vacuole HDA PubMed 

General protein information

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Preferred Names
Lipase/lipooxygenase, PLAT/LH2 family protein
NP_565527.1
  • Lipase/lipooxygenase, PLAT/LH2 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipoxygenase, LH2 (InterPro:IPR001024), Lipase/lipooxygenase, PLAT/LH2 (InterPro:IPR008976); BEST Arabidopsis thaliana protein match is: Lipase/lipooxygenase, PLAT/LH2 family protein (TAIR:AT4G39730.1); Has 190 Blast hits to 181 proteins in 41 species: Archae - 0; Bacteria - 2; Metazoa - 36; Fungi - 0; Plants - 151; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    9426796..9428170 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_127785.4 → NP_565527.1  Lipase/lipooxygenase, PLAT/LH2 family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565527.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8LEG8, Q9SIE7
    UniProtKB/TrEMBL
    A0A178VUI1, A0A5S9X0I1, A0A654EWM5
    Conserved Domains (1) summary
    cd01754
    Location:31 → 159
    PLAT_plant_stress; PLAT/LH2 domain of plant-specific single domain protein family with unknown function. Many of its members are stress induced. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SIE7.1

Gene LinkOut

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