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B3 domain-containing protein REM13 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817001, updated on 18-Sep-2024

Summary

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Official Full Name
B3 domain-containing protein REM13
Primary source
TAIR:AT2G24650
Locus tag
AT2G24650
See related
Araport:AT2G24650
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F25P17.5; F25P17_5
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Genomic context

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Location:
chromosome: 2
Exon count:
12
Sequence:
Chromosome: 2; NC_003071.7 (10483253..10487773, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ubiquitin-specific protease 19 Neighboring gene Transcriptional factor B3 family protein Neighboring gene pseudo Neighboring gene B3 domain protein (DUF313) Neighboring gene transcriptional factor B3 family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Assessing the role of REM13, REM34 and REM46 during the transition to the reproductive phase in Arabidopsis thaliana. Manrique S, et al. Plant Mol Biol, 2023 Jun. PMID 37171544, Free PMC Article
  2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Assessing the role of REM13, REM34 and REM46 during the transition to the reproductive phase in Arabidopsis thaliana.
    Title: Assessing the role of REM13, REM34 and REM46 during the transition to the reproductive phase in Arabidopsis thaliana.
Submit: New GeneRIF Correction

General gene information

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NM_001335950.1
NM_128026.6

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
B3 domain-containing protein REM13
NP_180041.5
  • DNA binding;DNA binding;sequence-specific DNA binding transcription factors; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: transcriptional factor B3 family protein (TAIR:AT2G24680.1); Has 1264 Blast hits to 283 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1262; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    10483253..10487773 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001335945.1 → NP_001325060.1  B3 domain-containing protein REM13 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B205, A0A5S9X166

  2. NM_001335946.1 → NP_001325061.1  B3 domain-containing protein REM13 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B214, A0A5S9X166

  3. NM_001335948.1 → NP_001325063.1  B3 domain-containing protein REM13 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B255, A0A5S9X166, A0A654F6J2
    Conserved Domains (1) summary
    smart01019
    Location:458 → 550
    B3; B3 DNA binding domain

  4. NM_001335947.1 → NP_001325062.1  B3 domain-containing protein REM13 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VL49, A0A1P8B219

  5. NM_001335949.1 → NP_001325064.1  B3 domain-containing protein REM13 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B216, A0A5S9X166

  6. NM_128026.6 → NP_180041.5  B3 domain-containing protein REM13 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_180041.5

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4IPS4, P0CAP5, Q9SJA0
    UniProtKB/TrEMBL
    A0A5S9X166
    Conserved Domains (1) summary
    smart01019
    Location:305 → 397
    B3; B3 DNA binding domain

  7. NM_001335950.1 → NP_001325065.1  B3 domain-containing protein REM13 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VL49, A0A1P8B210
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P0CAP5.2

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