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transducin family protein / WD-40 repeat family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817080, updated on 18-Sep-2024

Summary

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Official Full Name
transducin family protein / WD-40 repeat family protein
Primary source
TAIR:AT2G25420
Locus tag
AT2G25420
See related
Araport:AT2G25420
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F13B15.8; F13B15_8
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Genomic context

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Location:
chromosome: 2
Exon count:
15
Sequence:
Chromosome: 2; NC_003071.7 (10816749..10821168)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene tRNA-Arg Neighboring gene RING/U-box superfamily protein Neighboring gene uncharacterized protein Neighboring gene epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-like protein Neighboring gene receptor like protein 20

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A novel protein complex that regulates active DNA demethylation in Arabidopsis. Liu P, et al. J Integr Plant Biol, 2021 Apr. PMID 33615694
  2. Arabidopsis DDB1-CUL4 ASSOCIATED FACTOR1 forms a nuclear E3 ubiquitin ligase with DDB1 and CUL4 that is involved in multiple plant developmental processes. Zhang Y, et al. Plant Cell, 2008 Jun. PMID 18552200, Free PMC Article
  3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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NM_001335994.1
NM_128099.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of Cul4-RING E3 ubiquitin ligase complex ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
transducin family protein / WD-40 repeat family protein
NP_565594.3
  • transducin family protein / WD-40 repeat family protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal LisH motif (InterPro:IPR006595), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), LisH dimerisation motif (InterPro:IPR006594), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: WUS-interacting protein 2 (TAIR:AT3G15880.1); Has 3410 Blast hits to 2683 proteins in 316 species: Archae - 2; Bacteria - 469; Metazoa - 1038; Fungi - 599; Plants - 625; Viruses - 0; Other Eukaryotes - 677 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    10816749..10821168
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001335996.1 → NP_001325219.1  transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VX59, A0A1P8B2K0
    Conserved Domains (4) summary
    smart00667
    Location:191 → 221
    LisH; Lissencephaly type-1-like homology motif
    smart00668
    Location:37 → 86
    CTLH; C-terminal to LisH motif
    sd00039
    Location:545 → 587
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:466 → 718
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  2. NM_001335995.1 → NP_001325218.1  transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VVJ3, A0A1P8B2H9, A0A5S9X133
    Conserved Domains (3) summary
    smart00667
    Location:191 → 221
    LisH; Lissencephaly type-1-like homology motif
    sd00039
    Location:538 → 580
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:391 → 662
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  3. NM_128099.4 → NP_565594.3  transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565594.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VVJ3, A0A5S9X133, Q0WVR3
    Conserved Domains (4) summary
    smart00667
    Location:191 → 221
    LisH; Lissencephaly type-1-like homology motif
    smart00668
    Location:37 → 86
    CTLH; C-terminal to LisH motif
    sd00039
    Location:538 → 580
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:391 → 662
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  4. NM_001335994.1 → NP_001325217.1  transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VX59, A0A1P8B2H7
    Conserved Domains (3) summary
    smart00667
    Location:191 → 221
    LisH; Lissencephaly type-1-like homology motif
    sd00039
    Location:545 → 587
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:466 → 675
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
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