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AFG1-like ATPase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817091, updated on 18-Sep-2024

Summary

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Official Full Name
AFG1-like ATPase family protein
Primary source
TAIR:AT2G25530
Locus tag
AT2G25530
See related
Araport:AT2G25530
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F13B15.19; F13B15_19
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Genomic context

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Location:
chromosome: 2
Exon count:
14
Sequence:
Chromosome: 2; NC_003071.7 (10863059..10866910)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Drug/metabolite transporter superfamily protein Neighboring gene cellulose synthase A catalytic subunit 3 UDP-forming-like protein Neighboring gene pseudo Neighboring gene DNAJ heat shock N-terminal domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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NM_001336001.1
NM_128110.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
AFG1-like ATPase family protein
NP_180123.1
  • AFG1-like ATPase family protein; FUNCTIONS IN: ATPase activity, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AFG1-like (InterPro:IPR005654); BEST Arabidopsis thaliana protein match is: AFG1-like ATPase family protein (TAIR:AT4G28070.2); Has 3822 Blast hits to 3815 proteins in 1065 species: Archae - 0; Bacteria - 1862; Metazoa - 150; Fungi - 200; Plants - 101; Viruses - 0; Other Eukaryotes - 1509 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    10863059..10866910
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_128110.3 → NP_180123.1  AFG1-like ATPase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_180123.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654EW28, Q9SKJ6
    Conserved Domains (2) summary
    COG1485
    Location:112 → 642
    YhcM; Predicted ATPase [General function prediction only]
    cl21455
    Location:223 → 642
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  2. NM_001336001.1 → NP_001324719.1  AFG1-like ATPase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B0Z7, A0A654EW28
Nucleotide Protein
Heading Accession and Version

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