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C2H2-type zinc finger family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817235, updated on 18-Sep-2024

Summary

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Official Full Name
C2H2-type zinc finger family protein
Primary source
TAIR:AT2G26940
Locus tag
AT2G26940
See related
Araport:AT2G26940
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F12C20.2; F12C20_2
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Genomic context

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Location:
chromosome: 2
Exon count:
1
Sequence:
Chromosome: 2; NC_003071.7 (11496518..11497702, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene pleiotropic drug resistance 4 Neighboring gene Ubiquitin-associated/translation elongation factor EF1B protein Neighboring gene 4-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase Neighboring gene myb domain protein 104 Neighboring gene myb domain protein 81

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Promoter-based integration in plant defense regulation. Li B, et al. Plant Physiol, 2014 Dec. PMID 25352272, Free PMC Article
  2. Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses. Efroni I, et al. Dev Cell, 2013 Feb 25. PMID 23449474, Free PMC Article
  3. A PXY-Mediated Transcriptional Network Integrates Signaling Mechanisms to Control Vascular Development in Arabidopsis. Smit ME, et al. Plant Cell, 2020 Feb. PMID 31806676, Free PMC Article
  4. Transcriptional regulation of nitrogen-associated metabolism and growth. Gaudinier A, et al. Nature, 2018 Nov. PMID 30356219
  5. An Arabidopsis gene regulatory network for secondary cell wall synthesis. Taylor-Teeples M, et al. Nature, 2015 Jan 29. PMID 25533953, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables transcription cis-regulatory region binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of DNA-templated transcription TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
C2H2-type zinc finger family protein
NP_180262.1
  • C2H2-type zinc finger family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: leaf whorl, sepal, flower, leaf; EXPRESSED DURING: LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2 type zinc finger transcription factor family (TAIR:AT5G56200.1); Has 426 Blast hits to 409 proteins in 65 species: Archae - 0; Bacteria - 0; Metazoa - 190; Fungi - 5; Plants - 225; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    11496518..11497702 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_128251.2 → NP_180262.1  C2H2-type zinc finger family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_180262.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VWC2, A0A5S9X1L4, O81013
Nucleotide Protein
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