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nuclear speckle splicing regulatory-like protein (DUF2040) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817271, updated on 18-Sep-2024

Summary

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Official Full Name
nuclear speckle splicing regulatory-like protein (DUF2040)
Primary source
TAIR:AT2G27285
Locus tag
AT2G27285
See related
Araport:AT2G27285
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 2
Exon count:
4
Sequence:
Chromosome: 2; NC_003071.7 (11675814..11678118, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene coiled-coil protein (DUF2040) Neighboring gene FAM210B-like protein, putative (DUF1279) Neighboring gene NTM1-like 8

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_128287.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in regulation of alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
nuclear speckle splicing regulatory-like protein (DUF2040)
NP_565644.1
  • Coiled-coil domain-containing protein 55 (DUF2040); EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2040, coiled-coil (InterPro:IPR018612); BEST Arabidopsis thaliana protein match is: Coiled-coil domain-containing protein 55 (DUF2040) (TAIR:AT2G27280.1); Has 40028 Blast hits to 25465 proteins in 1773 species: Archae - 338; Bacteria - 5536; Metazoa - 16890; Fungi - 2992; Plants - 1451; Viruses - 173; Other Eukaryotes - 12648 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    11675814..11678118 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_128287.5 → NP_565644.1  nuclear speckle splicing regulatory-like protein (DUF2040) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565644.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VZR7, A0A654EWQ6, Q8S8I5
    Conserved Domains (2) summary
    PTZ00121
    Location:30 → 318
    PTZ00121; MAEBL; Provisional
    pfam09745
    Location:54 → 171
    DUF2040; Coiled-coil domain-containing protein 55 (DUF2040)
Nucleotide Protein
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