U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

mediator of RNA polymerase II transcription subunit [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817346, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
mediator of RNA polymerase II transcription subunit
Primary source
TAIR:AT2G28020
Locus tag
AT2G28020
See related
Araport:AT2G28020
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T1E2.6; T1E2_6
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 2
Exon count:
1
Sequence:
Chromosome: 2; NC_003071.7 (11933702..11934060)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene chaperonin-60alpha Neighboring gene Eukaryotic aspartyl protease family protein Neighboring gene Eukaryotic aspartyl protease family protein Neighboring gene Eukaryotic aspartyl protease family protein Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
part_of mediator complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
mediator of RNA polymerase II transcription subunit
NP_180369.1
  • BEST Arabidopsis thaliana protein match is: TATA-binding related factor (TRF) of subunit 20 of Mediator complex (TAIR:AT2G28230.1); Has 37 Blast hits to 37 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    11933702..11934060
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_128361.1 → NP_180369.1  mediator of RNA polymerase II transcription subunit [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_180369.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VLV0, A0A5S9X260, A0A654F7I2, A0A7G2EFG6, Q8S8F0
    Conserved Domains (1) summary
    pfam08612
    Location:1 → 59
    Med20; TATA-binding related factor (TRF) of subunit 20 of Mediator complex
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials