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UPSTREAM OF FLC protein (DUF966) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817361, updated on 18-Sep-2024

Summary

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Official Full Name
UPSTREAM OF FLC protein (DUF966)
Primary source
TAIR:AT2G28150
Locus tag
AT2G28150
See related
Araport:AT2G28150
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F24D13.6; F24D13_6
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Genomic context

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Location:
chromosome: 2
Exon count:
6
Sequence:
Chromosome: 2; NC_003071.7 (11999736..12002738)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene actin protein 2/3 complex subunit-like protein Neighboring gene enabled-like protein (DUF1635) Neighboring gene FER-like regulator of iron uptake Neighboring gene Cation/hydrogen exchanger family protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A SOSEKI-based coordinate system interprets global polarity cues in Arabidopsis. Yoshida S, et al. Nat Plants, 2019 Feb. PMID 30737509, Free PMC Article
  2. DIX Domain Polymerization Drives Assembly of Plant Cell Polarity Complexes. van Dop M, et al. Cell, 2020 Feb 6. PMID 32004461, Free PMC Article
  3. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
  4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001336145.1
NM_001336146.1
NM_128375.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein homodimerization activity ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
involved_in plant organ morphogenesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in protein polymerization IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in regulation of cell division IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of root morphogenesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in specification of plant organ axis polarity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in basal plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
UPSTREAM OF FLC protein (DUF966)
NP_180382.2
  • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF966 (InterPro:IPR010369), Uncharacterised conserved protein UCP031043 (InterPro:IPR021182); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF966) (TAIR:AT5G59790.1); Has 2510 Blast hits to 686 proteins in 184 species: Archae - 0; Bacteria - 433; Metazoa - 315; Fungi - 216; Plants - 186; Viruses - 4; Other Eukaryotes - 1356 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    11999736..12002738
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_128375.4 → NP_180382.2  UPSTREAM OF FLC protein (DUF966) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_180382.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8GYT8, Q9ZUV7
    UniProtKB/TrEMBL
    A0A178VQL1, A0A5S9X236, A0A7G2E9L3
    Conserved Domains (1) summary
    pfam06136
    Location:34 → 434
    DUF966; Domain of unknown function (DUF966)

  2. NM_001336145.1 → NP_001324990.1  UPSTREAM OF FLC protein (DUF966) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VQL1, A0A1P8B1S9

  3. NM_001336146.1 → NP_001324989.1  UPSTREAM OF FLC protein (DUF966) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B1T2
    Conserved Domains (1) summary
    pfam06136
    Location:40 → 294
    DUF966; Domain of unknown function (DUF966)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8GYT8.1

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