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trimethylguanosine synthase (DUF707) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817377, updated on 18-Sep-2024

Summary

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Official Full Name
trimethylguanosine synthase (DUF707)
Primary source
TAIR:AT2G28310
Locus tag
AT2G28310
See related
Araport:AT2G28310
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T1B3.17
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Genomic context

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Location:
chromosome: 2
Exon count:
13
Sequence:
Chromosome: 2; NC_003071.7 (12085356..12088121)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene Putative lysine decarboxylase family protein Neighboring gene Nucleotide/sugar transporter family protein Neighboring gene Pleckstrin homology (PH) and lipid-binding START domains-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Separating Golgi Proteins from Cis to Trans Reveals Underlying Properties of Cisternal Localization. Parsons HT, et al. Plant Cell, 2019 Sep. PMID 31266899, Free PMC Article
  2. Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. Parsons HT, et al. Plant Physiol, 2012 May. PMID 22430844, Free PMC Article
  3. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
  4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001161065.1
NM_179787.4
NM_179788.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables glycosyltransferase activity ISM
Inferred from Sequence Model
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus HDA PubMed 
located_in Golgi trans cisterna HDA PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in endosome HDA PubMed 
located_in trans-Golgi network HDA PubMed 

General protein information

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Preferred Names
trimethylguanosine synthase (DUF707)
NP_001154537.1
  • Protein of unknown function (DUF707); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF707) (TAIR:AT1G08040.2); Has 326 Blast hits to 325 proteins in 27 species: Archae - 0; Bacteria - 15; Metazoa - 0; Fungi - 0; Plants - 305; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
NP_850118.1
  • Protein of unknown function (DUF707); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF707) (TAIR:AT1G08040.2); Has 326 Blast hits to 325 proteins in 27 species: Archae - 0; Bacteria - 15; Metazoa - 0; Fungi - 0; Plants - 305; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
NP_850119.1
  • Protein of unknown function (DUF707); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF707) (TAIR:AT1G08040.2); Has 326 Blast hits to 325 proteins in 27 species: Archae - 0; Bacteria - 15; Metazoa - 0; Fungi - 0; Plants - 305; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    12085356..12088121
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_179787.4 → NP_850118.1  trimethylguanosine synthase (DUF707) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850118.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VYQ7, Q56Y17, Q9SKN9
    Conserved Domains (1) summary
    pfam05212
    Location:78 → 365
    DUF707; Protein of unknown function (DUF707)

  2. NM_179788.2 → NP_850119.1  trimethylguanosine synthase (DUF707) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850119.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VYQ7, Q56Y17, Q9SKN9
    Conserved Domains (1) summary
    pfam05212
    Location:78 → 365
    DUF707; Protein of unknown function (DUF707)

  3. NM_001161065.1 → NP_001154537.1  trimethylguanosine synthase (DUF707) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001154537.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VYQ7, Q56Y17, Q9SKN9
    Conserved Domains (1) summary
    pfam05212
    Location:78 → 365
    DUF707; Protein of unknown function (DUF707)
Nucleotide Protein
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