U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

RNA binding (RRM/RBD/RNP motifs) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817402, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
RNA binding (RRM/RBD/RNP motifs) family protein
Primary source
TAIR:AT2G28540
Locus tag
AT2G28540
See related
Araport:AT2G28540
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T17D12.10; T17D12_10
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 2
Exon count:
13
Sequence:
Chromosome: 2; NC_003071.7 (12218019..12223873)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Dof-type zinc finger DNA-binding family protein Neighboring gene vacuolar proton ATPase A1 Neighboring gene uncharacterized protein Neighboring gene DNA repair (Rad51) family protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. A DEK domain-containing protein modulates chromatin structure and function in Arabidopsis. Waidmann S, et al. Plant Cell, 2014 Nov. PMID 25387881, Free PMC Article
  2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

NM_001036360.3
NM_128414.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of CCR4-NOT complex IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
RNA binding (RRM/RBD/RNP motifs) family protein
NP_001031437.2
  • RNA binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: nucleotide binding, zinc ion binding, nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Zinc finger, RING-type (InterPro:IPR001841), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G45630.1); Has 940 Blast hits to 717 proteins in 219 species: Archae - 0; Bacteria - 26; Metazoa - 247; Fungi - 180; Plants - 143; Viruses - 0; Other Eukaryotes - 344 (source: NCBI BLink).
NP_180421.3
  • RNA binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: nucleotide binding, zinc ion binding, nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Zinc finger, RING-type (InterPro:IPR001841), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA recognition, domain 1 (InterPro:IPR003954); BEST Arabidopsis thaliana protein match is: RNA binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G45630.1); Has 925 Blast hits to 706 proteins in 218 species: Archae - 0; Bacteria - 26; Metazoa - 245; Fungi - 180; Plants - 141; Viruses - 0; Other Eukaryotes - 333 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    12218019..12223873
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001036360.3 → NP_001031437.2  RNA binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031437.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VWU0, A0A7G2EDP7, Q0WQD5
    Conserved Domains (1) summary
    COG5175
    Location:2 → 316
    MOT2; Transcriptional repressor [Transcription]

  2. NM_128414.3 → NP_180421.3  RNA binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_180421.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2EDP7, F4IIR1
    Conserved Domains (3) summary
    COG5175
    Location:2 → 316
    MOT2; Transcriptional repressor [Transcription]
    cd12438
    Location:104 → 203
    RRM_CNOT4; RNA recognition motif in Eukaryotic CCR4-NOT transcription complex subunit 4 (NOT4) and similar proteins
    pfam14570
    Location:9 → 60
    zf-RING_4; RING/Ubox like zinc-binding domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools