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PHF5-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817551, updated on 18-Sep-2024

Summary

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Official Full Name
PHF5-like protein
Primary source
TAIR:AT2G30000
Locus tag
AT2G30000
See related
Araport:AT2G30000
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F23F1.8; F23F1_8
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Genomic context

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Location:
chromosome: 2
Exon count:
2
Sequence:
Chromosome: 2; NC_003071.7 (12803823..12805024, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene alternative NAD(P)H dehydrogenase 2 Neighboring gene PSY3-like protein Neighboring gene TRICHOME BIREFRINGENCE-LIKE 45 Neighboring gene Protein phosphatase 2C family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_128555.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
PHF5-like protein
NP_565691.1
  • PHF5-like protein; CONTAINS InterPro DOMAIN/s: PHF5-like (InterPro:IPR005345); BEST Arabidopsis thaliana protein match is: PHF5-like protein (TAIR:AT1G07170.3); Has 420 Blast hits to 420 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 129; Fungi - 128; Plants - 86; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    12803823..12805024 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_128555.4 → NP_565691.1  PHF5-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565691.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O80873, P0DI19, Q0WMV8
    UniProtKB/TrEMBL
    A0A178W5C0, A0A5S9T1L9
    Conserved Domains (1) summary
    pfam03660
    Location:1 → 104
    PHF5; PHF5-like protein
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P0DI19.1
Q0WMV8.1

Gene LinkOut

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Research Materials