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protein FLC EXPRESSOR [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817564, updated on 18-Sep-2024

Summary

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Official Full Name
protein FLC EXPRESSOR
Primary source
TAIR:AT2G30120
Locus tag
AT2G30120
See related
Araport:AT2G30120
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T27E13.14; T27E13_14
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Genomic context

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Location:
chromosome: 2
Exon count:
3
Sequence:
Chromosome: 2; NC_003071.7 (12860147..12861971, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ubiquitin-activating enzyme 1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Lateral organ boundaries (LOB) domain family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. FLOWERING LOCUS C EXPRESSOR family proteins regulate FLOWERING LOCUS C expression in both winter-annual and rapid-cycling Arabidopsis. Ding L, et al. Plant Physiol, 2013 Sep. PMID 23899645, Free PMC Article
  2. The FLX gene of Arabidopsis is required for FRI-dependent activation of FLC expression. Andersson CR, et al. Plant Cell Physiol, 2008 Feb. PMID 18156133
  3. The FRIGIDA complex activates transcription of FLC, a strong flowering repressor in Arabidopsis, by recruiting chromatin modification factors. Choi K, et al. Plant Cell, 2011 Jan. PMID 21282526, Free PMC Article
  4. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
  5. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001161069.1
NM_001336242.1
NM_128567.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
protein FLC EXPRESSOR
NP_001154541.1
  • unknown protein; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14750.1); Has 2527 Blast hits to 2101 proteins in 358 species: Archae - 77; Bacteria - 245; Metazoa - 1087; Fungi - 215; Plants - 350; Viruses - 4; Other Eukaryotes - 549 (source: NCBI BLink).
NP_565694.1
  • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14750.1); Has 275 Blast hits to 241 proteins in 42 species: Archae - 4; Bacteria - 15; Metazoa - 15; Fungi - 4; Plants - 188; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    12860147..12861971 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001336241.1 → NP_001324954.1  protein FLC EXPRESSOR [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B1P6, A0A5S9X2J8

  2. NM_001336240.1 → NP_001324955.1  protein FLC EXPRESSOR [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VUP4, A0A1P8B1P9

  3. NM_001336239.1 → NP_001324952.1  protein FLC EXPRESSOR [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B1N9

  4. NM_128567.3 → NP_565694.1  protein FLC EXPRESSOR [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565694.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VWA9
    Conserved Domains (1) summary
    pfam04880
    Location:27 → 79
    NUDE_C; NUDE protein, C-terminal conserved region

  5. NM_001161069.1 → NP_001154541.1  protein FLC EXPRESSOR [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001154541.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4IMQ0, O64735, Q93ZA1
    UniProtKB/TrEMBL
    A0A178VUP4
    Conserved Domains (1) summary
    pfam04880
    Location:27 → 79
    NUDE_C; NUDE protein, C-terminal conserved region

  6. NM_001336242.1 → NP_001324953.1  protein FLC EXPRESSOR [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VWA9
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4IMQ0.1

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