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ETC2 Homeodomain-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817593, updated on 18-Sep-2024

Summary

Official Symbol
ETC2
Official Full Name
Homeodomain-like superfamily protein
Primary source
TAIR:AT2G30420
Locus tag
AT2G30420
See related
Araport:AT2G30420
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ENHANCER OF TRY AND CPC 2; T9D9.23; T9D9_23
Summary
In a tandem repeat with AT2G30424 and AT2G30432
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Genomic context

See ETC2 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
3
Sequence:
Chromosome: 2; NC_003071.7 (12960847..12962162, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ovate family protein 2 Neighboring gene ncRNA Neighboring gene tubulin folding cofactor A (KIESEL) Neighboring gene Homeodomain-like superfamily protein Neighboring gene uncharacterized protein

Bibliography

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

NM_179814.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
 

General protein information

Preferred Names
Homeodomain-like superfamily protein
NP_850145.1
  • ENHANCER OF TRY AND CPC 2 (ETC2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: trichome patterning, regulation of transcription; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G30424.1); Has 1991 Blast hits to 1991 proteins in 160 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1974; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    12960847..12962162 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_179814.4NP_850145.1  Homeodomain-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850145.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O04349, Q84RD1
    UniProtKB/TrEMBL
    A0A7G2EA76, D6C582
    Conserved Domains (1) summary
    cd00167
    Location:3978
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...