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GPI-anchored protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817621, updated on 18-Sep-2024

Summary

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Official Full Name
GPI-anchored protein
Primary source
TAIR:AT2G30700
Locus tag
AT2G30700
See related
Araport:AT2G30700
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T11J7.9; T11J7_9
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Genomic context

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Location:
chromosome: 2
Exon count:
8
Sequence:
Chromosome: 2; NC_003071.7 (13081752..13085451, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene callose synthase-like protein Neighboring gene lateral signaling target-like protein (Protein of unknown function, DUF593) Neighboring gene bacterial trigger factor Neighboring gene Ypt/Rab-GAP domain of gyp1p superfamily protein Neighboring gene Thioesterase/thiol ester dehydrase-isomerase superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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NM_179822.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
GPI-anchored protein
NP_850153.1
  • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G61900.1); Has 68 Blast hits to 67 proteins in 13 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    13081752..13085451 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001336283.1 → NP_001325072.1  GPI-anchored protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B227, A0A5S9X2Q7
    Conserved Domains (1) summary
    pfam19160
    Location:89 → 236
    SPARK

  2. NM_179822.4 → NP_850153.1  GPI-anchored protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850153.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9X2Q7, Q8RWE3
    Conserved Domains (1) summary
    pfam19160
    Location:102 → 249
    SPARK
Nucleotide Protein
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