U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CYS2 PHYTOCYSTATIN 2 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817757, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
CYS2
Official Full Name
PHYTOCYSTATIN 2
Primary source
TAIR:AT2G31980
Locus tag
AT2G31980
See related
Araport:AT2G31980
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtCYS2; F22D22.27; F22D22_27; PHYTOCYSTATIN 2
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See CYS2 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
2
Sequence:
Chromosome: 2; NC_003071.7 (13609093..13609955, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene low-molecular-weight cysteine-rich 75 Neighboring gene glucan synthase-like 3 Neighboring gene DNA repair-recombination protein (RAD50) Neighboring gene uncharacterized protein Neighboring gene Exostosin family protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Distinct expression patterns of two Arabidopsis phytocystatin genes, AtCYS1 and AtCYS2, during development and abiotic stresses. Hwang JE, et al. Plant Cell Rep, 2010 Aug. PMID 20526604, Free PMC Article
  2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. High temperature and wounding stress enhanced the expression of both AtCYS1 and AtCYS2, but the temporal and spatial patterns of induction differed.
    Title: Distinct expression patterns of two Arabidopsis phytocystatin genes, AtCYS1 and AtCYS2, during development and abiotic stresses.
Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Homology

NM_128758.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
PHYTOCYSTATIN 2
NP_180758.1
  • PHYTOCYSTATIN 2 (CYS2); FUNCTIONS IN: cysteine-type endopeptidase inhibitor activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Proteinase inhibitor I25, cystatin, conserved site (InterPro:IPR018073), Proteinase inhibitor I25, cystatin (InterPro:IPR000010), Proteinase inhibitor I25, cystatin, conserved region (InterPro:IPR020381); BEST Arabidopsis thaliana protein match is: cystatin B (TAIR:AT3G12490.2); Has 619 Blast hits to 613 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 610; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    13609093..13609955 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_128758.4 → NP_180758.1  PHYTOCYSTATIN 2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_180758.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8L5T9, Q9SL01
    UniProtKB/TrEMBL
    A0A178VSQ8, A0A5S9X324, A0A654EY11
    Conserved Domains (1) summary
    cl09238
    Location:47 → 142
    CY; Cystatin-like domain; Cystatins are a family of cysteine protease inhibitors that occur mainly as single domain proteins. However some extracellular proteins such as kininogen, His-rich glycoprotein and fetuin also contain these domains.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8L5T9.2

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools