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HMG-box (high mobility group) DNA-binding family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818008, updated on 18-Sep-2024

Summary

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Official Full Name
HMG-box (high mobility group) DNA-binding family protein
Primary source
TAIR:AT2G34450
Locus tag
AT2G34450
See related
Araport:AT2G34450
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F13P17.25
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Genomic context

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Location:
chromosome: 2
Exon count:
7
Sequence:
Chromosome: 2; NC_003071.7 (14526619..14529601, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene O-acetyltransferase family protein Neighboring gene ncRNA Neighboring gene photosystem II light harvesting complex protein B1B2 Neighboring gene light-harvesting chlorophyll-protein complex II subunit B1 Neighboring gene AGAMOUS-like 29 Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene urease accessory protein G Neighboring gene Ribosomal protein L18ae/LX family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Arabidopsis genome encodes structurally and functionally diverse HMGB-type proteins. Grasser M, et al. J Mol Biol, 2006 May 5. PMID 16563436
  2. MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays. Popescu SC, et al. Genes Dev, 2009 Jan 1. PMID 19095804, Free PMC Article
  3. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
  4. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
  5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. At2g34450 protein is a nuclear protein, whereas the At5g23405 protein is found mainly in the cytoplasm
    Title: The Arabidopsis genome encodes structurally and functionally diverse HMGB-type proteins.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001036403.1
NM_001336514.1
NM_001336515.1
NM_128997.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of DNA-templated transcription ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
HMG-box (high mobility group) DNA-binding family protein
NP_001031480.1
  • HMG-box (high mobility group) DNA-binding family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: high mobility group B2 (TAIR:AT1G20693.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_001318353.1
  • HMG-box (high mobility group) DNA-binding family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: high mobility group B3 (TAIR:AT1G20696.1); Has 3501 Blast hits to 2767 proteins in 283 species: Archae - 0; Bacteria - 0; Metazoa - 2368; Fungi - 291; Plants - 519; Viruses - 3; Other Eukaryotes - 320 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    14526619..14529601 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001336514.1 → NP_001318353.1  HMG-box (high mobility group) DNA-binding family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O64702, Q2V430
    UniProtKB/TrEMBL
    A0A178VQH6, A0A5S9X3W4, A0A654F9F6
    Conserved Domains (1) summary
    cd01390
    Location:63 → 128
    HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...

  2. NM_001336515.1 → NP_001324951.1  HMG-box (high mobility group) DNA-binding family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O64702, Q2V430
    UniProtKB/TrEMBL
    A0A178VQH6, A0A5S9X3W4, A0A654F9F6
    Conserved Domains (1) summary
    cd01390
    Location:63 → 128
    HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...

  3. NM_128997.3 → NP_565788.1  HMG-box (high mobility group) DNA-binding family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565788.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O64702, Q2V430
    UniProtKB/TrEMBL
    A0A178VQH6, A0A5S9X3W4, A0A654F9F6
    Conserved Domains (1) summary
    cd01390
    Location:63 → 128
    HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...

  4. NM_001036403.1 → NP_001031480.1  HMG-box (high mobility group) DNA-binding family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031480.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VQH6
    Conserved Domains (1) summary
    cd01390
    Location:63 → 129
    HMGB-UBF_HMG-box; HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O64702.2

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