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VSR5 VACUOLAR SORTING RECEPTOR 5 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818059, updated on 18-Sep-2024

Summary

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Official Symbol
VSR5
Official Full Name
VACUOLAR SORTING RECEPTOR 5
Primary source
TAIR:AT2G34940
Locus tag
AT2G34940
See related
Araport:AT2G34940
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
binding protein of 80 kDa 3;2; BP80-3;2; F19I3.17; F19I3_17; VACUOLAR SORTING RECEPTOR 3;2; VACUOLAR SORTING RECEPTOR 5; VSR3;2
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Genomic context

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See VSR5 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
12
Sequence:
Chromosome: 2; NC_003071.7 (14740348..14743417)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene CLAVATA3/ESR-RELATED 42 Neighboring gene miscRNA Neighboring gene disease resistance family protein / LRR family protein Neighboring gene tRNA-Thr Neighboring gene cationic amino acid transporter 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A family of Arabidopsis plasma membrane receptors presenting animal beta-integrin domains. Laval V, et al. Biochim Biophys Acta, 1999 Nov 16. PMID 10561538
  2. AtVPS45 complex formation at the trans-Golgi network. Bassham DC, et al. Mol Biol Cell, 2000 Jul. PMID 10888666, Free PMC Article
  3. A DEK domain-containing protein modulates chromatin structure and function in Arabidopsis. Waidmann S, et al. Plant Cell, 2014 Nov. PMID 25387881, Free PMC Article
  4. 14-3-3 proteins fine-tune plant nutrient metabolism. Shin R, et al. FEBS Lett, 2011 Jan 3. PMID 21094157
  5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_129047.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within protein targeting to vacuole TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
part_of Golgi transport complex IPI
Inferred from Physical Interaction
more info
 PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
VACUOLAR SORTING RECEPTOR 5
NP_181040.1
  • VACUOLAR SORTING RECEPTOR 5 (VSR5); FUNCTIONS IN: calcium ion binding; INVOLVED IN: protein targeting to vacuole; LOCATED IN: integral to plasma membrane, Golgi transport complex; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), EGF-like calcium-binding, conserved site (InterPro:IPR018097), EGF-like calcium-binding (InterPro:IPR001881), Growth factor, receptor (InterPro:IPR009030); BEST Arabidopsis thaliana protein match is: VACUOLAR SORTING RECEPTOR 6 (TAIR:AT1G30900.1); Has 10681 Blast hits to 5483 proteins in 264 species: Archae - 0; Bacteria - 175; Metazoa - 9320; Fungi - 5; Plants - 378; Viruses - 0; Other Eukaryotes - 803 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    14740348..14743417
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_129047.4 → NP_181040.1  VACUOLAR SORTING RECEPTOR 5 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_181040.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O64758
    UniProtKB/TrEMBL
    A0A178VYD0, A0A384KPH5, A0A5S9X4A4, Q0WTC8
    Conserved Domains (2) summary
    cd00054
    Location:512 → 540
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cl28883
    Location:53 → 174
    PA; Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O64758.1

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